HsaINT0031206 @ hg38
Intron Retention
Gene
ENSG00000196352 | CD55
Description
CD55 molecule (Cromer blood group) [Source:HGNC Symbol;Acc:HGNC:2665]
Coordinates
chr1:207325622-207326837:+
Coord C1 exon
chr1:207325622-207325721
Coord A exon
chr1:207325722-207326751
Coord C2 exon
chr1:207326752-207326837
Length
1030 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTCTTCCCCTGTTGCTTTAGGTA
3' ss Score
10.74
Exon sequences
Seq C1 exon
AGAAATCATGCCCTAATCCGGGAGAAATACGAAATGGTCAGATTGATGTACCAGGTGGCATATTATTTGGTGCAACCATCTCCTTCTCATGTAACACAGG
Seq A exon
GTAAGTTTGGGCATACTAAAACCCTGTATTTAGGAAATGAGAAAACAAATTAGGACTTAAGGTGAGATTGTTAGTTTCATGACTGGTATTCACAGCTAGTAGCAATTAAAACAATCCCTCTCCTCAAAGACCCTTCATCATGAGCTCATCACAGTTAAATTTAGTAAAATGGGGGCAAGAAAGGAAGATTTCTTAAACCACCAGAATTCTCTAAATTCTGATTTCAGTAAATATGTGATTCAATATAAAATTTTAAATGTGATTAATAAAAAAATTTGAGATGATGATACTTGCAGAAATCTTCAAATGTTAAATACTAAACCAATCTTTAGTTGACCTAAATAATGAATTTGCATGAGTTTTTCTATATGCAAACAAGCTGTTACAAAACAGCATGAGTTAAAGACATTCCTAGTGTGAAAGTATTCTAAGTTCTTTGATAAGTTCTCTGTATAGGGAGAAGGAACTCATTCATTGAGTACCATCAATGTCTCAGACACTGTTGAAAACTTTACATTTATTTTCTCATTTCATATCTGTAAATTAAATAATTCTATTTTACTCTGTGTGTGTCCCTATTCTTTATAAAGTAAAAATATCAGTATCACTTGTCTCCTATACGAAACACAGATATTGGTTAGGTCATGAACACAAAATCTGGGAAGTACTTTGAACCCTTTAAATATAAGTACATTCTATTATTCTGTGAAGCCCATATTTAGAACTCAGAGGTATAAAATGTTCAATCATCTATGTCATTTAAAAATGTTTAAAACACTTTTATGCTTTCTAACATATTCCCCATGCAAATAAAAAATGTACATGTCTTATCTGTTTTTACTCTTTGGATGTCACGTTTTTAAACTTAATTTTTCTTTTCCTTTAAACTACTGTGTGGACTTTTATCAACTACTGTTTTATATTCACCTAATTGTGTAGTAAATATTTTAAGATAATAACCTGGAGAATTTGAGGAAAGTCAAATATGTGTGAATGTAACAAACTCTTTTTTCTTCCCCTGTTGCTTTAG
Seq C2 exon
GTACAAATTATTTGGCTCGACTTCTAGTTTTTGTCTTATTTCAGGCAGCTCTGTCCAGTGGAGTGACCCGTTGCCAGAGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352:ENST00000367064:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.2)
A:
NA
C2:
PF0008415=Sushi=PD(46.6=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCATGCCCTAATCCGG
R:
GCACTCTGGCAACGGGTC
Band lengths:
182-1212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development