HsaINT0031538 @ hg38
Intron Retention
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]
Coordinates
chr3:48182929-48183836:-
Coord C1 exon
chr3:48183800-48183836
Coord A exon
chr3:48183031-48183799
Coord C2 exon
chr3:48182929-48183030
Length
769 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTCCTTTTTTACTTTGATAGCAG
3' ss Score
5.42
Exon sequences
Seq C1 exon
CCTTGAAAATCCTATGAGAAGAATACATTCCCTACCT
Seq A exon
GTAAGTTAGTTCCTTGTTTATTTTGAGCTAATACCTGTTATCTGTTCCTTAGCTACCAGCATGACCTTGATAGGAGACTTAATTTAGAGAGTAAAAACTGCTTTTCTTTAGTCTCTTTTGAGACAAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCAAAATCTTGGCTCACTGCAACCTCTGCTTCCCTGGCTCAAGTGATCCTCCCACCTCAACTTCCAGAGGAGCTGGGACTATATATAGGTGCACACCATCACACCCGGCTGATTTTTGTATTTTTTGTAGACATGGGGGTCTCACTCTGTTGCCCAGGCTGGTTTCAAACTCCTGCCTCGGCCTCCCAAAGTGCTAGGATTATAGGCAAGAGCCACTATTCCCAGCCTTTCCTTAGTCTCATAAGTACTCAAGATGTTCGGTCTGGAGGAATTTGTCCTCCATCTCTAACAGAGCTTTATTAAACCAGGAAGGGTTCTTTTGATGCAAATGTTATTTGGGGATTGATTTGGCACTGTAATCCCTGTTGAGGGGGGCACTGTAGACCTTGTGAGGTTAGCTGTAAACCCATGGAATGGAAACTTCTATGCTGTGTCCTGGCTGTGTCCTGGCAAGGTGGATTCCTGGCCACATTTACTGGTTACCTACTGCAGTGTGTGAGGAGCTAGTCTACCCCCTATTCAACCCCCCTTTTTTTTCTTTTGAGAACTGAATTTTCCACTGAAATTTTATTTGTGTGCCTTAATTATTTTCCTTTTTTACTTTGATAG
Seq C2 exon
CAGAAGCTGTTGGGATGTAGTCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGACATCTTTCAGCTCATCGACCCAGATGAGAACAAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045:ENST00000302506:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.535
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(20.0=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(55.0=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development