MmuINT0032733 @ mm10
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109879231-109879935:+
Coord C1 exon
chr9:109879231-109879267
Coord A exon
chr9:109879268-109879833
Coord C2 exon
chr9:109879834-109879935
Length
566 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTCTGTTTTACTTTGATAGCAG
3' ss Score
5.87
Exon sequences
Seq C1 exon
CCTTGAAATTTCCCTGACGAGAATAAATTCCCTACCT
Seq A exon
GTAAGTTCTGTTGTTTTGAGCTAATACCTGTAAATTGCTCCATCAAACACCTTTCCCTACGATGAGAAAGTGGGCATTGCTTTTCTACATCCCTGTAAACACATAGGCAGTAAGGTATTACCTAGAGGAACTTCAACAGTAACAGCCTCTTGTGGACTTTGTACTCACCTCAGTTTTATCAAACCAGGAAATGTTCTTTTTATGCAAATGTTACTAGGGGGTTGGTATGGCACTATATCATACCTGCCAAGAGGTCAATGCACCTTGTCTGATTAGGTGGAAGGCCATTCTGAGTTAGAGCAGGTTGAACCCCTGGGCACTTATGTGGTGGTAAGCTAGTTTTTCCAAACCCCACTTCATTTCTTTAAGAATTAAAGTTTTGGCTGGGTATAATAGGTCAAACATGTAATCTTAGCATTTGGGAGGCTGAGGCAGGAAGGTCATCTCAAGTTCAAGGCCAGCCTTGTCTTCAAAGTGAAACCTTATCTTAAAAAAAGAAAAAGGTAACCTGAGTTTTCCATTGTGCTTGCCTCTGTGAACTCAATTTCTCTGTTTTACTTTGATAG
Seq C2 exon
CAGAAGCTCCTGGGATGTAGCCCAGCCCTGAAGAGGAGCCACTCTGATTCTCTAGACCACGACACCTTTCACCTCATCGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477:ENSMUST00000094324:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(5.1=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types