RnoINT0032510 @ rn6
Intron Retention
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117956855-117957589:+
Coord C1 exon
chr8:117956855-117956891
Coord A exon
chr8:117956892-117957487
Coord C2 exon
chr8:117957488-117957589
Length
596 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTCTGTTTTACTTTGGCAGCAG
3' ss Score
6.63
Exon sequences
Seq C1 exon
CCTTGAAATTTCCCTGAGGAGAATAAATTGCCTACCT
Seq A exon
GTAAGTTCCTTTGTTGTTTTGAGCTAATACTAATACCTGTAAACTGCTCCATCAAACACCAGCTTCCCTACGTTTAGGAAATGGACCTTGCTTTTCTACATTCCTGTAAACACACAGGCAGTAAGGCATTACCTAGAGGAACTGTGACTGCCTCTTGTGGACTTCGTACTCAATCTTAGTTTTATCAAACCAGGAAATGTTCTTTTCATGCAAATGTTACTAGGGGGTTGGTATGGCCCGTATTATTACCTGCCAAGAGGGCTACAGGCCTTGTATGATTAGGTGTAAGGCGATTCCGGATTCTGTAGAGCAGTTGGAGCCCTAGGCACAGTTACTGGTTACCTGCTACAGTATGTGGTGATAAGCTAGTTCTTCCAAACCCCGCTTCATTTCTTTAAGAATTAAGATTTTAGCTGGGTATAATAGGTCAAACCTGTAATCTTAGCTTTTGGGAGGCTGAGGCAGAAAGGTCATCTTGAGTTCAAGGCCAGCCTGGGCTTCAAAGTGAAACCTTATCTCAAAAAAAGGAAAAGGAAAACTAGGTCTCCCATTGTGCTTTTCTCTGTGAACTCAATTTCTCTGTTTTACTTTGGCAG
Seq C2 exon
CAGAAGCTCTTGGGGTGTAGCCCAGCGCTAAAGAGGAGCCATTCTGATTCTCTAGACCACGACATCTTTCAACTCATTGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737:ENSRNOT00000028141:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]