HsaINT0031564 @ hg38
Intron Retention
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]
Coordinates
chr5:138286022-138286630:-
Coord C1 exon
chr5:138286497-138286630
Coord A exon
chr5:138286134-138286496
Coord C2 exon
chr5:138286022-138286133
Length
363 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTCTGGGTTCTCTCTAAAGGTG
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGAGCCTTAAACTTATATAGTCAGGAAGAACTGTTTAACTTCTTTCTGAAGAAGCCCATCGTCCCTTTGGACACCCAGAAGAGAATAATCATCGTGTTCCACTGTGAATTCTCCTCAGAGAGGGGCCCCCGAAT
Seq A exon
GTGAGTGTCTAAATGGGGTCTGGCGGGTGATGGAAATGGATTTTGAGTTGGACTTCCCACACCAGTTCAGACAGAGACTGACTGGATTCTACAGTTTGAAGAATGTTAGGGAGGTTGAAGGAAGACGTTTCTAAAATTGAAAAGTTTGAAACAATAAAGGAAAAGGGATTGAGAATGAGGCTGCAGTGGAGGAAAGGAGGAAGGGTGGTACTACTTGGACCTTTTTTTGCAAACACAGGGAGATTGGAAAGTCCTTTTTGAGGTTGGCAATAGTCTACTCCTCTCCCCCCTCCCCAGTGAATGGCCCCTGGGATCCTGACCTTGTTTCTTTCCACCCCACCCATCTCTGGGTTCTCTCTAAAG
Seq C2 exon
GTGCCGCTGTCTGCGTGAAGAGGACAGGTCTCTGAACCAGTATCCTGCATTGTACTACCCAGAGCTATATATCCTTAAAGGCGGCTACAGAGACTTCTTTCCAGAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402:ENST00000323760:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
NA
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTTAAACTTATATAGTCAGGA
R:
CTGGAAAGAAGTCTCTGTAGCCG
Band lengths:
238-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development