RnoINT0032534 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27530409-27531293:-
Coord C1 exon
chr18:27531160-27531293
Coord A exon
chr18:27530521-27531159
Coord C2 exon
chr18:27530409-27530520
Length
639 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATCTTGGATTTTCCTTACAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGCCTTAAACCTGTACAGTCAGAAGGAACTATACGAGTTCTTTCTGAAGAAGCCTGTTGTCCCTGAGGACACCCAGAAGAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCAGAGAGAGGCCCACGAAT
Seq A exon
GTGAGTGTCTGCGATGGTGGGAACAGACCTTGAGTGAGATCTGGCACTTCAGTTCGGACAGAGATGAGCCTGAACGAATGCCTTCCACTGTGATTCGCAGGGTGCCAGGGTGACTGAAGGGAGGCGCTCCTATAATTCAAAAGTTGGAGCGCTAAAGCACTGGGCACTGGAGATGTGACTCAGCTGGCAGAGTGCTTGCCTAGAATAGAAACTCCTCGGGTTTGATGCCCAATGTTGCATAAAAGTGGGCATAACTATACACACCTATAATCCCAACACAGAAAAGTAAGGGAAGGGTTGGGGGTTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCACAAGGCCCTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAAAAAAAAGAAAAGAAAAGTGAGGGAGTTCTGGTGTTTCGGGGATACACAAGTGGGAAGATGAGAAATTAAGGTCATCCTGGGTTCTAAATCAGCCTGGGCTAGAGACCCTGTCTCCAAAAAGATCCAGATGTGGTATATCATGTGTCTCTAATCCCAGCACTCAGGAAGCTGTTCTTCCCCTCCCTCCCTCCCTCCCACTGAAGGACCATAGAGTCCTGACTTTGCCTCCTTCATCCAACCCATCTTGGATTTTCCTTACAG
Seq C2 exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCAGCATTATACTACCCTGAGCTGTATATCCTCAGAGGGGGCTACAGAGATTTCTTTCCAGAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
NA
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTTAAACCTGTACAGTCA
R:
CTGGAAAGAAATCTCTGTAGCCCC
Band lengths:
238-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]