MmuINT0032758 @ mm9
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34893231-34894506:-
Coord C1 exon
chr18:34894373-34894506
Coord A exon
chr18:34893343-34894372
Coord C2 exon
chr18:34893231-34893342
Length
1030 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTCTGTGTTTTCTTTACAGGTG
3' ss Score
13.86
Exon sequences
Seq C1 exon
GGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCCGAGAGAGGCCCTCGAAT
Seq A exon
GTGAGTGTCTGCATGAGTTGAAGCCGGGGATGGAAACGGATCTTGAGTGAGACGTGGCACACCTGTTTGGACAGAGATGAACCTAAATGAATGCCTGCCACTGCAGTTCCATGAGCATTAGGGTGATCGAAGGAAGGTGTTCTTACAGTTCAAAAGAATTGGGCATTGGCAATGTAACTCCGCTGGCAGAGTACTTGCCTAGAATATTTAGTCCTTGGGCTTGATCCCCAATATTGCATAAAGCTGGGCGTAATTATACATCCCTATGATCCCAACACAGAAAAGTAAGGGAGTCGTGGTGTGTCAGGGATACACAAGCAGGAAGATCAGAAATTTAAGGTTCTAAATCAGTCTGAGCTAGAGATCCTGTCTCAAAAAAAAAAAAAAGATCCAGACATGGTGGTCCATGCCGATAATCCCAGCCCTTAGGAGTCAGAGGCAGATAGATAACTGAGTTTGAGACCAGCCTGGTCTACATAGTGAGACCCTGTTTCAAAAACAAAACAAAACAAAACAAAACAATGAAAAACCCATGTAAAACACACACACACACACACAAAGGGATTTGGGGATGAAGCTTCAATAGAGGAAAGGGAAGAGTGTCACTGGACCTTGGTTGGTAAACATGGTGAGAGCCTGTGTGTATTGGGGTGGGGGTGGCTGTGGATTAAACCTGGGTCTTCTGCCAGGTGGTGGTGGCGCACGCCTTTAGTCTCAGCACTTGGGAGGCAGAGGCAGTCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCAGTCTCGAAAAAACCAAAACCACACCAAAACAAAACAAAACACAAAACCCTGGGTCTTCTGTGTACTACATGGTACTCTACCACTGAGCTACGTCCCAACACTGGAGGTCCTCCGGGGCAGTTACTCATAGTGTGTTCTTCCCTCCCTCCCACTGAAGGACCATAGAGTCCTGGCCTTGCTTCCTCCATCCAACCCATCTCTGTGTTTTCTTTACAG
Seq C2 exon
GTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTGAACCAGTATCCGGCATTATATTACCCTGAGCTATATATCCTCAAAGGGGGCTACAGAGATTTCTTTCCAGAGTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-Cdc25c:NM_009860:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(40.7=100)
A:
NA
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTTAAACCTGCACAGT
R:
CTGGAAAGAAATCTCTGTAGCCCC
Band lengths:
238-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: