HsaINT0031689 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102947721-102949904:-
Coord C1 exon
chr14:102949765-102949904
Coord A exon
chr14:102947803-102949764
Coord C2 exon
chr14:102947721-102947802
Length
1962 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CAATGTTTCTTCCTTACCAGAGA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTCCCAAAGCCCACGGGGGTGAAGAAGGGATGGCAGCGCGCATATGCAGTCGTCTGTGACTGCAAGCTCTTCCTGTATGATCTGCCTGAAGGAAAATCCACCCAGCCTGGTGTCATTGCGAGCCAAGTCTTGGATCTCAG
Seq A exon
GTCTGCGTTTGGGCAGCACTGTCCTTGCTCTGTGAATCTTCCTCAGCTATCTTTAGCCAAAAGGACGGTGTGTTCCTTAGTAGTCTTTCACCTCATTAGTACTTCACCTGCTTCATTATTGTATGGTTGCAAAAATGGGTACAGCTTAGTCATGACTTCAGGCGCTCACATGCGTATGAACAGACATGCATACGGGCCTGCGTGCGCAGGAACGGGAGCGCTGTAGACGCTTCCTGCCTCGCATGTGTTTGCGTTGAGAAGTTTGCCACAGGGGAATTAATTTAACATAAGAAAACCACATGCCCAAGAACAAGCAGAAGATATCCCAGAGAAAAGCCACGCGGCCCACAGCCGTCTGTGCGTTTTAGAGACCGCAGCAGGTGCTGGTGTGTGGAAGAAGTCTGGAGCCGTGGGCCATGTGGGTGTGCGTGGCCGTAGCGTTTGCTATGTGACCCTGTCTCAGTGCCACCCAGTGTCAGCTGCAGGAGCAGGCGGGGCCTCCTTCCCACTTCCTCTTAGAGTTGACATCTGTGGCTCATCTGTTAGTGAGAAGAGGACAGTGGTCATGTTACTGGCATGTGGAATGTTGTTGTGAAGGTAAACGCATCACTAAGAGGCCTAGCTCAGCCCGGGGCCTGCACACGGAGCCATGCTACTGCCTTTGTGTCATCTCTGTGCTGTGCCCGTGCACCGTCTGTTGTGTGGTGCACACGGGACTGCTCTGGGCTCAGGCCGGGGCTGGGTACTCCATCTGTAGCATTGGTTCTTGGGGGCAGGGCTGCTGGGTGGGTACCCTGAGGACAGCGAGGGTGAGTCGGCATCACCTGGCAGCATACTCCACTTTCCATGTCCCTTCCCCCGGGGCACCCGCCAGTCCCTGGCTGTGCACAGGTGTGCCCCTGGCCTGGTGGTGAAGGGCCACTGGTAGACGAAAAGTTGGCATGAGCCCAAGTCAGGGGCCCCATCGGAGGGCTCAGCACTCTTTAGGGAACCTCTTCAGAACAGCATTTCCACACTGATCCCACACCCCGCTCCCCCTCTCACCTCCACACCCACCCCCTGCTCCCCCCTCACCTCCACACCCACCCCCACTCCCTCACCCCCCCACCTCCAAACCCACCCCCCACTCCCCCTCTCCACAGCCACCCCCCCACCTCTGCACCCACCCCACCTCCGCACCCACCCCACCCCCTCATCTCCACACCTAGCCCCCACTCCCCCTCATCTCTACACCCACCCCACTCCCTCTCACCTCCACACCCACCACTCCCCCTCACTTCCAAGCCCACCCCCCACTCCCCCTCACCTCCCTCCAAACCCACCCCCCACCCTCCCCTCACCTCCACACCCACCCCACCCTCCCCGTCACCTCTCCACCCACCCCACCCTCCCCCCTCACCTCCACACCTACCCCCCACCCCCCTCACCTCCAAACCCACCCCACCCCCCTACTCCCCGTCTCACCTCCACACCCACCCCCCTACTTCCCCCTCACCTCCACCCCCACCCCACCCCCGACTCCCCTCCACCTCCACACCCACCCCCCACTCCCCTGTCACCTCCACGCCCACCCCCCACCACCCCCCACTCCCTCCCACTCCCCCCTCACTTCCACACCCCTCACCCCACTTGTCCTCTGCACTTGGCTGTTGGAGGGACTGCCTGGCTGTGCCAAGTGCAAACCGAGTCTTCTGTAACTGGCATAGTCTGGAGGCACCAGCACAGTGGGGATGAGGCTCCGGGGTTTCCCTTGCGGCATCCCTAAGCCCTGAAACACCTGCCAGAGTCTTGAGTTTGTTGGCCCTGCCCGTGTTTCTTACATCTGGGGAGGCGAGGGACCCGCCCTCCACTGCAGAACACGGTGGTGGAAGGACATGGCAGGGCAGGGCAGGGCAGGGCGTGGGAGGGCCTTGGGTCCTGTGCGCGTGTCTCCCAGCGGGGTCAATGTTTCTTCCTTACCAG
Seq C2 exon
AGATGACGAGTTTTCCGTGAGCTCAGTCCTGGCCTCAGATGTCATTCATGCTACACGCCGAGATATTCCATGTATATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGGGTGAAGAAGGGAT
R:
ATATACATGGAATATCTCGGCGTGT
Band lengths:
206-2168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development