RnoINT0032653 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135758302-135759522:-
Coord C1 exon
chr6:135759383-135759522
Coord A exon
chr6:135758384-135759382
Coord C2 exon
chr6:135758302-135758383
Length
999 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTGTGTCTCTTTCTTGCCAGAGA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTCCCGAAGCCCACAGGCGTGAAGAAAGGGTGGCAGCGGGCTTACGCAGTGGTCTGTGACTGCAAGCTCTTCCTGTACGACCTGCCAGAAGGGAAGTCCACCCAGCCTGGGGTCATCGCCAGTCAAGTCTTAGACCTCAG
Seq A exon
GTAGGTTTAATCCACAAAGCACTAATGCTCCGTCCACAGTGGCGGGCCTGTGAGACCTGTGCGGCCTGCTCATTTCTCTCCGTGTTTCTCTGAAGAATGGTTAACAGGTAGAAGGAGCTGTCATGAGAATTAACCAGGTACCTCGGGCACACTCGGTGCCACCTATGGGAAGGGCCTGCGTTATTCCCACCTTTTGCCAAATCAGAACAGCTGGCTAACATCGGTAGTTGGCCTAGTAGCAACACAGGCTCAGGTCTGCGTGGTCTTTGGCTGGTTCCTTCCGAGAGTTGTGAGAGCAGAGATGAGTCAGAGTCACCCAGCAGTGGCAGCGTCCCATGCATTCCATGTCCCCATCCCAAATGGTACCTGCCGTCTAAGGCTGTCTCGGTCACTGTTGAGACTGAGGACCAGGGCGAGTCTTAGAGAGGAAAGCGCTCAGTGTACTTGCTTACAGGTTCAGGGGTTTAGTCCATTGTCATCGTGAGGGAGCATGAGAACATGCATGGTGCAGGAACAGTAGCTGAGCTACGTCCTGATCTGAAAGCAGAGACTGAAGGGAGCCTGCGGTGTCTTACAGAGCCCACCCCAGTGACACACTCCTTCCAGCAGGGTTACATCTTTCCAATCCTTCCAAACAGGGCTGCTCCTTAGTGACTGAGTGTTCAAATCCATAGGCTATGGGGGCCACTCTTACTCCAGTCACCACAATGCTATGTCCCAGCCTGAGCCCAAATGTCTGGGCCTCACTGAGGGTGGAAAACAGCCCATCCTGGACCTAGCACCTTCTGCTTCTTGTTTATGGTTGTACCAGGACAAGTGTGGGGTGTAGAGCTGGGGGAACAGCGGGCCATGTGACCGTGCAATCCAGGCAGAGGGCTCTGTCCTCAGCACCCCCCTCACCCCCCCCACCCCCAATCCAGTGATATGAGTTGTGCAAATATGGCAGCAAATGTGTGGGGCTTTCTCAGAGCCGCGTGTTGTGTGTCTCTTTCTTGCCAG
Seq C2 exon
AGATGACGAGTTTGCTGTGAGCTCAGTCCTGGCCTCAGATGTCATCCATGCTACACGCCGAGACATCCCGTGTATATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGGCGTGAAGAAAGGG
R:
TATACACGGGATGTCTCGGCG
Band lengths:
206-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]