DreINT0043802 @ danRer10
Intron Retention
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18518394-18519904:-
Coord C1 exon
chr20:18519765-18519904
Coord A exon
chr20:18518476-18519764
Coord C2 exon
chr20:18518394-18518475
Length
1289 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACTTTGATTCCTCCTCACAGGGA
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATCCCGAAGCCCACCGGAGTGAAGAAGGGCTGGCAGAGAGCATATGCTGTAGTGTGTGACTGTAAACTCTTTCTCTACGAGGTGCCAGAAGGGAAGTCCACTCAACCTGTCGTGATGGCCAGTCAGGTCCTTGACTTGAG
Seq A exon
GTGAGGACTAGTCACATTTATTTTTTATTTTTTTATTCTTTCTTTTATATACACACACACACATAGATAGATAGACAGACAGACCGACCGACCGACCAACCGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAGATACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATACATAGATAGATAGATACATAGATAGATACATAGATAGATAGATAAATTAAGTCTTAAAGTGTCCTAAATCTCAAAAGATCAATTTCAGGTCTTAAAGTCTAAAAATCTACTGAAATATTGTGTTGTATGTCTTAAATTTTTTTTTAACAGATCTTTTTCTTTGTTCATGTATTGCTATCCAATCTGGCCATTAACACCCATACAATCACCACTTTTAACTTTAAAGTATCATTTAATTACATTCCTTACAGAAACATTTGCTTAAAAGTTCACTATTTATTTACTACTAATGATACTGACCTGGCCTATATTTTATAAAAATTGAATTATTATTATTATTGCATTATTAAGTTTTATTTGCTTAAGTTATAATAATAGTTTTTTGATAGGTCAAGTGAAGATCTTCCCCAACTGAGCTATTCGGGGGGAAAAAAGAAGTCTAAAATTTAATTCTTGATGGTCTTAAAAATGTCTTAAATTTAATTTAGTGAAATCTGCAGAAACCCTGATGTCATTTTCTGCAAGTAAATTATCTAAATTATTAATTCATTAGAATTTTTCCAAAACGCATAATCAGTAGTTTATTGAATAAAACACAAATAAAAATGTTGCTTAAAACACATGCTTATTTATTTCAAATGGACAATATTGTCGTGAACCGACAATAACTTTCAAATGGTCTCTTAATTTTTTTCAGAGCTGTTTAAATGACACAATACTCATCAAAATAAAGGGTAAAATAAAACACAAAGGAGTACTTTTAATTTTTGTGACTTTGATTCCTCCTCACAG
Seq C2 exon
GGATGAGGAGTTCTCTGTTAGCTCTGTGTTGGCATCTGATGTGATCCATGCCAACCATAAAGACGTTCCCTGTATATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383:ENSDART00000049437:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(38.7=100)
A:
NA
C2:
PF0016924=PH=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAGTGAAGAAGGGCTG
R:
AATATACAGGGAACGTCTTTATGGT
Band lengths:
206-1495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]