GgaINT0056377 @ galGal3
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52431405-52433174:-
Coord C1 exon
chr5:52433035-52433174
Coord A exon
chr5:52431487-52433034
Coord C2 exon
chr5:52431405-52431486
Length
1548 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTGTTCTCTTTTTTTACTAGAGA
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTTCCAAAGCCTACAGGAGTCAAGAAAGGGTGGCAGAGAGCCTATGCTGTTGTCTGTGACTGTAAACTCTTCTTATATGATGTGCCTGAAGGAAAATCCACCCAGCCTGGAGTTGTTGCAAGTCAAGTCTTGGATCTCAG
Seq A exon
GTTTGTGTTACTATGACAGTGGAGAAATCCTTTATTTTTATTTTTAATTTTCCCTGACAAGAGTACTTATATGTGGTATGCAAGAAACTTTTGGATCATAAAAAGTCTGCTTTGAAGAAGACTTTATTTTCTGAGTATAGACGCCAGCTAAATTTAGACTGAAAGAAGAGGCTCCGTAACAGTAAGTCACTTGAGTGACTTCTGAGAAGGCACAAGTATCAGAGTATTAGCATGCTTCTTCCTAGAATTCCATATGCCCAAACAGAAAACAAATGTACTTGGTGGATGGGTTCTTCTGCTGCATTCCTACCTAAACAGTGAGTCAGATTGTCACATAGTCAGTAATTTTAGGAAAGTTAAGAAGACTGAAGCAGCCTTCAGATAAGCATCAGCTAATTGACCATGCAAATGCCTCTGACTCTGCCTTCTCACAAGAGTCATTTTTTCATGATGAGCCATTTTAACGCTGAGCACTGCATGCGAAAGTTCTGAGACTTGCATTCATCAGAGTAACAAAGTTGTTTTACAATTTTAATTTATGGGAATATCAAGTGTAGTAACTTACAATGTTACAATACACTCTGTTGAATATAAAGTTTGCATTCCCAAGCATCTTGATTTATATATTTCGCAGACAGTAGTACCGTGGGATTGCATCGGTACTGCAGCTCTGCTCTCACATTTATTCTCTGAGTATCATCAATGTCAGTTCTGTGACATGCTGGCAGCAGAAGTGCAGATCTATTCAAAATAGCAGCATTCTCATCAGTACATTGCTTGAAGCAACTCAGCCAGATATTACACTGACTGTAGTATGCTTTATCTGTTTATTGTAGCTGCCTCTTTGAATCTGTCTTCTGAAGACTCTTAGATGTTTTAATAGACGCTAACTACCACAGCTGTGAATTCTAGCATGGGCAAGTTTAGTGGCATTAGTGTCATCTTTACACTAAAATTGGCAATTATGATGATCAACTTGGTCAAAATGCAGTTTAAAAAGGCTTGTGTGGACAAGCCCTCTGGGGTGGAGCGTTCTGAAATGCAAAAGTTGTTCCGATGTCTGTTTATTTTACTGTAATAGAGAATAAAATCTAGCTGTTTTAAAAACCCTTATTTGAATCCCACAAACTATAATTATGTTGCCAAGAGCTTTTTATATGATTTTTCTTTTTTTCCAAAGGCCCCTCTCTTGCTACACATTGAGGTATGAATTATTCATTTCTAATGTGTCTGCTGGGCTGGAAGAGCAATATTCTTGCTGCTAATTGTAGAATAGGTGTGGCTGGTAAAACAAAACTACACTAAGCCAGCCCACTTAACTTCAGGTGTACTTAGTTACATGTACAAACGCTGTAGAACCATAACTAAAGCTTGTGAGTTGTTTAGGTCAAGGGCAGTTATAGCATAACAAATGAGTGATCCCAGTTGTGACCTCTGTGCAGTGTTAAGAGATTGCAGCCTATTGAAAACAGTGTGATATCAGTTAGATTTTGCTGAATACGTTTGTGTGCACATGTATGTGATTCTCTTGTTCTCTTTTTTTACTAG
Seq C2 exon
AGATGAAGATTTTTCTGTGAGCTCTGTCCTAGCACCAGATGTAATACATGCAACTCGTAAAGACATCCCTTGTATATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAAAGCCTACAGGAGTCA
R:
CCTGAATATACAAGGGATGTCTTTAC
Band lengths:
222-1770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]