HsaINT0031690 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102946468-102947802:-
Coord C1 exon
chr14:102947721-102947802
Coord A exon
chr14:102946685-102947720
Coord C2 exon
chr14:102946468-102946684
Length
1036 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
TTCTGTTTCCTGTCATGAAGGTG
3' ss Score
6.13
Exon sequences
Seq C1 exon
AGATGACGAGTTTTCCGTGAGCTCAGTCCTGGCCTCAGATGTCATTCATGCTACACGCCGAGATATTCCATGTATATTCAGG
Seq A exon
GTATGAATTTTTCATTAATCTTTTTAACAAAGCACATGGTTAAAACTGATTGTTCTAGGCATGTCATTGTGCTGCGGCAGCCATCAGCGCACCTCCAGTGTGGCCCTAGGGTCTCAACCTCCAGCCTGGCTCCAGGTCCTTGTGCGTCCCGTCCTGGCCAAGTAGCAGCCTGTGCCCGTCTCGGGGAGCCTCCTGGCTGGCTTCTTCCCAGACACCCCTCTTCACTGACCCTCCCTTCTCCTACATCTGAAACTCCTCTTCCACTCAGTCCACGTCCCGGCCACTGTCCTCACAGCGTGTGCACTGCCAGGCGGGCGCTGTGGCAGGTTAGGCATGAAGGTGCCTCTCCAGTGCCCCCCAGCCAATTGGAGCCAGCGTTTTTGTTGACTGAGTGAGTGCTCCCTCACTGAGTTAGTGTTAGACATTGTAGCATTAGGACGTTCCTAGAAGACTGAATTGGGGAAAGAAACCCTCCAGCCCCCTCCACTGGGAATTTTCTTATAAACAGCAAAATTTTGATAACAAAACTAAGTCTATAAATTAGCTTTTACTAAATCACAGCTCTATTCAGAAACAACCCTGTCATACACAGTACAGGAAATTACCATCATTGTTACTGGAACGATGGTCATTTGGTAGCATGCGTGCTCAGAGGCTGCTCACAGGGAGGCATGATTTGGGCCAGTGTTTTTGAGATCTGCTTTTCCTGGACACATTTTCAGAATCTACTTTTATAATGATTATTCAAGAAAGCAGATTTAAAGTAGGCAGCTACTCGTAGTTTTGACAAAAGCAGAATTAACGAAAATGGGACCAGGAAGCGATCTCACGGGGCTGTTTAGAACCCCGCCCCTTCCGTGTCCTGCCGCGGGAGCCTCTGCAAGGCGCCCAGCGAGGTGGAGTCAGGGGTCCCTGCCTGGGAAGCACATCAGCCCCCGTTGCTCCTGGGGTGCGTGGCTCCAGCAGGGCCGTGGTAGCTGCGTGCGGCTTTGGCGTTTGATGACTTCTCTCTTCTCTTCTGTTTCCTGTCATGAAG
Seq C2 exon
GTGACGGCCTCTCTCTTAGGTGCACCTTCTAAGACCAGCTCGCTGCTCATTCTGACAGAAAATGAGAATGAAAAGAGGAAGTGGGTTGGGATTCTAGAAGGACTCCAGTCCATCCTTCATAAAAACCGGCTGAGGAATCAGGTCGTGCATGTTCCCTTGGAAGCCTACGACAGCTCGCTGCCTCTCATCAAGGCCATCCTGACAGCTGCCATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGTTTTCCGTGAGCTC
R:
ACGATGGCAGCTGTCAGGAT
Band lengths:
294-1330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development