RnoINT0032654 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135756811-135758383:-
Coord C1 exon
chr6:135758302-135758383
Coord A exon
chr6:135757028-135758301
Coord C2 exon
chr6:135756811-135757027
Length
1274 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
GTTTTGTTTCTCTCATGAAGGTG
3' ss Score
8.16
Exon sequences
Seq C1 exon
AGATGACGAGTTTGCTGTGAGCTCAGTCCTGGCCTCAGATGTCATCCATGCTACACGCCGAGACATCCCGTGTATATTCAGG
Seq A exon
GTATGAGTCTCTCCGATTTTATTTCTGTCTGTTGATCGTTTTAAAAATAAATCACGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAATCACACTGTTAAAAGACAGTAATTCTTAAAACAAAACCGAAAGCCATAGGCACATTGGAGCACACCTTCAATCTCAGTGCGTGGGAGCCAGAGGCTATCCCAGTGGCCCCTCGCCTGCCTCATGTTCCCACGGTGCACCAGGTGCCTCCCCGATGGTATAGCTGCCCCTCACTGAGCAGCCTGCTCTCCCTACACAGCCTGTTTCATGTGGAGTCTGCCCACCACTGGCTTCCCATGGAGCCTCCCTCTTCACCCCAGTCACTGTGTCTTAGCATTGAAGGGACATTTCGTGGTGGACCTGTGAGGCGAGAGTTGCTTTAGGCCCCCTCCCTGGCATCCAGACTCTTAAATTGACCACATCTGGTTTGTCTCTTCTCTCTGACTGGGTTGGTGCCCTCTGCTCTCCGGGGTGGCTGCATACTGTGATATAGGGCACTGCCACATTAGGAAGTTTCTGGAAGACTCGGTCAGAGAAATGCACACTGCCTCAAGTTTGCCGACCACAGAGCTAAGTCTGAGAGTTGTTTGCACTGAGTCACACTTTGATTCAGAAGCAGCCTTTGTATATAATCCAGGAAACCACCACCATTCCATGCTCAAAGTGACAATCGTTATAGCTGTGGGGCTCCCAGGTTCCTAATGTCCTACTGAATACTTACCGGAGACCCTTTCTTCCTTGGACATGCCCTAAGAGTCCACATCTTAATCAGAATAAAGCTATTAACAAAAAGAAAAAAAAATTTTGAGGCAGGGTCTCTATCGGAGCTGTTGCAGAACTTAACTATATAGATCAGACTGGCCCACAGATCCTGCTGCCTCTGGCTCCTGAGGTGCACGCCACCACACCCAGCCAAGACATTTTTAAATGTGCTTACACGGTAGTGTTGACCAGAGCAGAATTAGTTGAAGTCTGGCCGGGAAAGGATGGATGTCTGTTTGCAGCCCTGTCCCTTCCTGTCAGCAGCCTGGCTGGCAGTTGAAGAGCCTGGTGGTCTCTGGGGCGACTCAGAGACACTGACATGACTGATCCCGCTAGTGACCTCTGGAGCCAGGCGGTTCCAGCACAGTCCCTGCTCTGACCTGGCTGACAGCTCATGGTCTTGTCTGTTTTGTTTCTCTCATGAAG
Seq C2 exon
GTGACGGCCTCTCTCTTAGGTTCACCTTCTAAGACCAGCTCACTGCTCATCCTGACAGAGAACGAGAATGAAAAGAGGAAGTGGGTTGGGATCCTGGAAGGGCTGCAGGCTATCCTCCACAAGAACCGGCTGAGGAGCCAGGTGGTGCACGTGGCACAGGAAGCGTACGACAGCTCACTGCCGCTCATCAAGACCGTCCTGGCTGCCGCTATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTTTGCTGTGAGCTCAG
R:
CCACAATAGCGGCAGCCAG
Band lengths:
294-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]