HsaINT0032885 @ hg19
Intron Retention
Gene
ENSG00000113722 | CDX1
Description
caudal type homeobox 1 [Source:HGNC Symbol;Acc:1805]
Coordinates
chr5:149546344-149562476:+
Coord C1 exon
chr5:149546344-149546884
Coord A exon
chr5:149546885-149562330
Coord C2 exon
chr5:149562331-149562476
Length
15446 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CGGCTCCTTCTGCTTCTCAGGTA
3' ss Score
8.33
Exon sequences
Seq C1 exon
AGGACAGCCGAGTTCAGGTGAGCGGTTGCTCGTCGTCGGGGCGGCCGGCAGCGGCGGCTCCAGGGCCCAGCATGCGCGGGGGACCCCGCGGCCACCATGTATGTGGGCTATGTGCTGGACAAGGATTCGCCCGTGTACCCCGGCCCAGCCAGGCCAGCCAGCCTCGGCCTGGGCCCGCAAGCCTACGGCCCCCCGGCCCCGCCCCCGGCGCCCCCGCAGTACCCCGACTTCTCCAGCTACTCTCACGTGGAGCCGGCCCCCGCGCCCCCGACGGCCTGGGGGGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCCGCCGCCTACGGCCCGGGCCCCGCGGCCCCTGCCGCCAGCCCAGCTTCGCTGGCATTCGGGCCCCCTCCAGACTTTAGCCCGGTGCCGGCGCCCCCTGGGCCCGGCCCGGGCCTCCTGGCGCAGCCCCTCGGGGGCCCGGGCACACCGTCCTCGCCCGGAGCGCAGAGGCCGACGCCCTACGAGTGGATGCGGCGCAGCGTGGCGGCCGGAGGCGGCGGTGGCAGCG
Seq A exon
GTAAGGACCCTTCCCTCGCCCTGCGCCTCTGGACCTGCAGGTGCTCGGGCGCGGCCCAGGCCGCCCCCTGTCTGACCTCTGCTCCGGCCCTGCTCGGGTTCCCGGGAGTGTGGCCCTCCTGTCCACTCTCGCCCTGGGGGGCTGCTCTTTGGCTCCCTCTCCTCAGTCTCAGGCTATCGGAGCCTTCAGCAGCACAGCCTAACCCTCTCTCTGTACAGATAGGGAAACCGAGACCCCCTGCGAAGTGCGGAAATGCGCCTGCGGCCGCGGAGCAAGACCCGAACTAGAACGCAGGCTCCCAGACTCGTGTCCCACACTCATTTAGCAACACCGACTCCGTGCTCTTCATCTGCTTCTTCCACTCCTAACCCAGCCCTAGGCAAAGGCGGCAGGTTCGCCCCAGAAGGGACGATTAACTAACTGTGTGAACAGGGCAGGTGACTTTCCTGGCCAGGGCTGGGTCTCCCCATCACACAGTCAAGACATTGCTGGGTCATATCCTTCAGGCTGAAAAAGAGCCCTCTTTGGCCAGACTGGGGCAAGGGGTCTGTACCTTACCTTCTCAGGGTCCTCCCTGAACTCTTGACCCCGGGGGAGGGGAAGCGGGAGCAGTGGGAAGGGGGGCTACTGTTTGGCTCCTGAGCCTGTGAACCTCCTGCCCCCAGGCAGGCCTCTCTGATCCGCCCTCTTCAAAGGCAGGGTAGGGGGCAGGACAAAGGGCCCAACTTTAATGAGGGGCGGCTTGACCTCCGTTATGGGTCCCCCCTTTGTCATGCAACTGGCTCTGCCTTGGCTCGGTAGTGACTCCTGTTGGCCGGAAAGTGAACACGACGTTCCATTGTCCGGACTGTGTCCGGCCTGTCCTGACAAAGGCCACCTAGCCTTGGGGGCGGGAAGCTGGCCTGCCCACCCTTTGATGTCCAGCCCCTCCTCCCCTTACCCCAGCTGCGAATAATCCTGGGACTTCTCCCACCTCCTCGCACTCTTCACCCCCATCTCCCCACACACACCCAGCTTGCCTCGGGGCAGATGCTGGGTTGGCCTTGATCAGGAGCTACGGGTTCTGGCCATAATCATATCCCCTTTTTGGAAGTCCCGGGGATACATAACCTCCTATCTGCCTCCAGGGAGATGCAGGGAACCAGACTCTGCCACTTGCTTCTGTGGCCTTGATTAAATAACAGCTAATGTTTTGGAACACTTAACTAACGGACCAGGCATGACCTAAGTAAGATCTTGCATGCATTAACTCCTTTAACTCTTAAAACATCATCGTAGGTACTATTATCACCCCCATTTTAAGATGAAGAAACTATGGCATAGAGAGTTTAAGTACTTGCCCAAGGCCATATAACCTGTAACTAGTGGGGCTGGGATTTGAACCCAGGTGGACTAACCACTAAGTCTGTGCTCTAATTCTCTACACAACAGCTCCTCTTAAATCAGTCATCTTTTCTGGGTTTCAGTTCTACTGTCTGTGAAATTAGAGAGAAGGGAGATTATGCAGTGGTTTGTACCCTTGTTTAAGTTACAAAAGGACTCCTTTGAAAAATCTGCTGAAAGGTACAAATGTTGCATCATTGGGCAATTTCAGGGGTTCTGGAGGCTACCAGAAGCTTTATCCATAAATCCGGGGTTAAGAACCCTGTGTTCTATGAGAGGAGGTGGTGGCAGCACCAGTGCTCAGGATCCTGCAGTTCCCAGTCTGTGAGGCTCTGGAGAAGGAAGCCTGTGTTTCCTGCTCCTGTGTTCCACTTTCTGCTTCCTGCTCATGGGGTGACTTTGGAGATGAATGGGGAGGTTCCCTATGGGTAGGGACTTGGAGAGAGGCCATCACTGTGTAAGGGAAAAGGAGTGTGTCAGTGGGGGTCAGGGGACTGGGTATCCTGGAGGAGTTTCCAGGAGCTTCCATACAAATCACCTCGTGTCTCTGGGCACGAGAGCTGCTGAACCTGGCTCATCCTCTGGTCTCAAAAGTCGCTTGAAAACTGTTGTCTGCAGGCAGATGAGTCTACCCCAGGCAAAAAAGCATTTCCCCCTCCTTGCTCTCCGAGAGTAGAGGGAAAGGCAGAAGGAGGTCTGGGGGTTCCCAAGGCTCCAGGAAAGGGACTTCCCTGGAGCCAGGTTAGCCCTCTTCCGCAGAGGATGCAGGAACCCTGACCTTCTTGAAGCCAGAAGGTGCTGCCTGTCTTCCCAGGGCATCTGACTGTCTATTCAGTGCTCCTGAAGTGGGGGCAGAATTGGGTTGGCACTGTTGACTCTCCCTGAGAGAGAGGCCAAGCCCCTCCTGTCTTTGGCCTCAGTTTCTCCTTCTGGGCAATGAAGGCATAGGGTTTCCAGGGGTGCTTCCTGTGCAATGCTGCTGTCCAGGACAGCTGAAGGAGGATCAGTGCATGCCACTGCCCTCCTAATCCCCACTGGCACTGGCCACCAGGTCTTCAGCCTGCCACCAATCCTGGCTAGCCCCCTTTTGCCCCACTTCTGAGCCTCCAGCATTCGAGAGTGGACAAACTGGACAGTTAGAGACCACACATGTAGACGAGGGAACCAAGGTACAGAGACTGTGAAGAATGTTCCAGTTTCACACAAGCGGGGCTGAGCTGGGCTAGATGTCAGAAGAATTGGTTTAGAATTTTCCTATGGTTTCCCATCATATGTAGGATAAACCCCACATTCCTTCCTGAGGTCTACAAGACTACAGCATTTGCACCTGCCTGCCTCCCTGACCTCATCCCCGGCTGCTCTCACCTTGGCTTCCAAGCTCTAGCCATTCCAGACTTCTTTTAGTTCCTCAGACCTGCCAAGTCCTACTGCAGATCTTGTGCACATGCTGTTCTCTCTTCCAGGAAAGCTCTTTCCCCTGATTCTTTGCAAGAGTGGAACCTTCTTACCCTTCAGATCTTAGTTTCATCATCACCTCCTCTGTGAAACCCTCCATCATTTCCCAAAGTGGACTCCCCACTACACCCATCACGAATCTTTGCTGTGTTTCCTTCAGAGCACTAATTCCAATCTACTCACTTCCTTACACTTGTTTGTATGTTGTCCATTCCCGTGAGGTCCAGAACTATGTCTGCTTAACCCACTACTGCATCCTGGCACCCAGCTCAGTGCATGGCATTTAGTAGGTGCTCAATATATTTTGTTGAGTGAATGAACAGGGCAAGTGTGAGGGACAAAAGGCATCTCTGGGGAACAGGGGAGTGGGTGAGATCTTGGCTTTCACACAGGTTTCTGAGGTCCCAGCCCTAGGATTGGGACCTGTGACTGTCAAGCCAAGCAGTTCAGGTCAATGGAAACCTGGCTGCCTCTGTCTCTCCACTTGGATGGTACCCCAACTCACCTGGGGAAGTGGGGTTGCTGAGGCTGGGACTAAGACTTCAGTTTCTTCTAAGGAGGGGGCAGTGACAATGGGAAAGATGAGAGAGAGGCTGTTGGGCTTCAATCAGTCTCCGATTCCAAAAGACAATATTAATCAGTTATGAGTGATCAGCATCATTTGACTGAGGCCAGGATAGGAAATGACTACAAGACGTTCTTTTTTTTTCCTTTTCTCTTTGCATTTTCATGAGGAGGGTTTTAAATATCATCATTTTCATTAGGATGGTTACGCATCATCCTTCCGTGGAAGGCTCAGCCTCCAATTCCTTTGAATAAAGCTGCTCCACAGGTTAATGGCCCATTGGGGTGGCTGAGGTCTCAGGACTGGGGAGATGTTCACGTGGATGAGACTGTGGGAGCAAGGTTTAGATCTTGGTCCAACCCTGTCAACTTTCAGATGGGGAAACTGAGGCCCATGAAGGATATGAATCCTCCCCTCCCCCCACATTGCAGGTCCTCTCCCTTGGCCCATTGCCACAGCCACCAACCTGCTGTCTCACCTTCAGCCTTTCTGTACTGCTCCAGCTATCTTCTAAAACCATTGCCATATTTACCTTCTCAAGGCACATGCCCTGCTCAAGAGCATTCTGTGGCTCCCTACTGACATGGAATTGCCATTTCATTTTATGCCATTTCTTTTTTCTTTTTTTTGAGACAGAATCTTGCTATGTCACCCACGCTGGAGTACAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTGCTGCCTCAGCTTCCCCAGCAGCTGGGACTACAAGCGCACGCTGTCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGTGTCCGGCCTTTTATGCCATTTCTTTGTTGTAAAATCCAGCTCCATTTCTATGGCAATCAGAGCCTTCTTGAGAACTGGCCTCAACCATCTATTGAAGCCATTCTCCTGCTACTTTGCCTAGATAAGGCAAGTTAAGAGCCAGGGCTTGGGAGTCTCAGAGCTGGGATTGCATTTCCATAAGAAGCTGTATAGCTTCGGACAAGTTAATTTGGATCATTTCTCGGAGCCTGGGCTGCTTCTGCTGTAACAGGATAATAATAGGATTGCATCTCAGAAGAGATGCCTGTAAAGCACCGCCCTGCCGCTGGCACACAGTAGGTGCTTAGGGCATCGGTGCCTGTGACCACCTCTACCAGTCCTCAGCAGGTGCACTGGAGCACACACCTCACACTCCCAGCCTCTCTAGTCTGGTCCCTCGGCCTGCATTGCCCTCCCTTCCCTCTCCTGCATCTTCACCAGCTCAAATGCTGCTCCTTCTCCGAGGCTGTCTCCTGTAGGAAGCCCTCCCTGATTCCTCCTCCCAAGCACTGTATCAGGCCCTTGTTTTCATGACACTTACCACTGCCTGTCTACTTTCATTGTCTTGTTTATCCCTGCCACTGACCATCTGTAGTCCCTCAAGGACCAGTCCTAATCAGTCCCATCCTCACCCTGTCTTGCACATAGTAAGAGCTCGTGATAAAGCAAATAACTGTGGCATTGGCTAAATCTTTACTGTGTGCCAGGCACTGTGCCAATAACTTTGCATGGGTGATCTCACTTAAGTCTCATGATAGCCCTGAGTGGTGTAAGGATCTAGTATACTCATTTTATAGATCAGGATAATGAGGCTCAGAGAGGGTAAGGTGGCCTGCCCAAGCTCATACAGCTAGGACATGGCAGCACAGTGTTTACACCCAGTCTACAGCCCAGCAATCGTCTGTGAAATAAAGACACACTCACGAAGGGGAGCCTGAGACCCCCCCTTCCCCATGGGCATCCCAGCCAGGTTGGGGGGAAAGGAGGCCAGGCAGGGGATGTACTGTAAGAGGCTGGGGGAGGAGGGGGCCCAGCAGGGGCCTGGCTGTTTAGAACCGATTCTCCAGGCAGAAGCTACATTTGACACCTCATCGCTCAGATATAGCTGGGAAAGGGAATGACCCAGTTAGAAGGTGGCAGAAGGCTTTTTTTTGGTTGGGTGTTTTCTCCCTGCTGCTTTGGCAGATATTGCTGCTCAGAGCTTGGGGAATCATTGTGAAGGTCCAAAATGGTTTGTTAGCAGCAGGGTCTGGTGTGTCCATAGGAAGTTATCTTAATGGGCCGGCCTCTCAGGTTTTTGTGTTGGAGCTCCTGGGATATGGAAACAACATTCACATCTGGAGTCAAGGCCGTCACCATGTTAGCATGCCAGACCCTCCCCATGCCACGCTCACCCCTCAGGCTTGTGGGGGCACCCCACATGGATCCCCCCCATCAACAGAAAGAGGGAGCAAGCTAGGCTCCACACCCTCCCATGGCTTCCTTTTGTTCTTGAAACCAAATCCATATCCCTCTCCTACAGAATCTGCTGGCCTCTCCAGCCCCATCTTGTGCCTCTCTCATTCATTCATTCATTCAAGCAGGCAAGCAGTAATATTCTCTGAGTGAGTGTCTTCTGTCCTGAACTTGCTCCTAGGCATTGGAGATGATGGCCTGAACAAGGCAGACGGGTCCACCTGCATGCAGAGAGCTGCCCTCTCTGCCCTCACTCTGCTCCTCCCTGCCTGGGGGCCTTTGTACCTACTGCTCACTCTCCCTGGAATGTCTTTCCCTGTTCATGACATGGAAGCCTCCTTCTCAACCTCAGGTCTTGGCTTAAATGTGGCCTGTTCCTGGAGACCTCCCCCAGCTAAGTAAAGTAGCGTTCTTCCCCTCACCTCACCAGTCGGTTTAGCTCATTGCTCACTTTCCTTCCTGCTGCTAATCCCAGTTTGTCATTATTTCATTTGTTTGTTTTTAATCTACCTCCCCTGCCATGAAGGAGATAATGAACTATTTATCAAATAAGTACTAAGCAGTTATTATGGTAATCATAATGCGAACCAGCATCTATTGGGTGCTCAGTGTGTTCAGCATTTTTTCAAATGCAAGATTTCTGTCCCCGGAACAGCACATTTCTTCTCCATCAAATGAGTGGCTGGACTAAGCTTTAGGAGCAATGGAGATGGACAGAAGGCTGTGCTTTGGAGGCTGAGCCACCAGCTGCTGGAGTGGACTTGGGGAGCAAGGGAGACAGGACTGAGAGGTGCCACCTTGGCTTTTGATCTGAATGGCTGGAGGATGGAGGTGCTGTTTATTGAGTTAAAGAAGCAGAGGAAGTAGCAGGTTTGTTTTATGTATTCACCAAGGATTCATCAAGTACTCACTGTGTGTGTCAGGCACGTGATAGGTGCTGGTGAGCTAAATGGCATGGCCCTACCCTCAAAGAGCATTCAGGGAGCCAAGGCCTAAGGGGAGGGTCTTCACCAAGGTCACACAGCCAGCTAGGGGTAGGAAGGGGCTGGAGGCAGAGCCCCTCACTGCAGCCCCACCTCGAACGTGAGACTTCGGGAGCCACACCTACAGTGGAGTAGCAAGGGCTTCACTCTCAGACTAGTCTAGTGGAAGATGGCCAGGGGGGCAGTGGCCTGGAAACTCCACCAGGAAACAGTTCAGAGAGGCCTCAAGTTCTTCGGCCTCAGAGAAGACCTGAAGGGATGCAGTTGCTGTTTGTAAATCTTAAATGGCTGTCTTGGGCTCAGGGTGCCCCTGTGGAAAAACTCAGGAAGGATATAAATGGGTGGCAGATGCAAGAACTGGCTGCTTTGCAGCTAGTAGGCGTGTGCTGCAGTGTGGGCGTCCGGACCCTGGTAGGAGTTTGATCTAGCAGCGTTTGTCCAGTAGGACTTTCCGCCAGGATGGAAATGCTCTGTATCTGTGCTGTCCAGTAGGCAGCCACCAGCTGCACATGGCTGTTGAACACTTGAAATACAGCTAGTGTGACTGAGAAACAGAATTTTATATTTTATTTAATTAATGTGGCTAGTTGCTGTCATATTGGACAGTGCAGAAAAATCTCTCTCAAGAGTTCCCAGAATGGAAATCCATTCTGCATAAGCTCCTTGTTCTTGCATTGAGGAATCTCTCCTGCCTTTTTTTTTTTTTTCCTGAGATGGAGTTTTGCTCTTGTCGCCCAGGCTGGACTGCAATGGCGCAATCTCGGCTCACTGCAACGTCCGCCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCACACGCCACCACGCCCAGCTAATTATTGTATTTTTAGTAGAGACAGAGTTTCATCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCTCGCCTGGCCTCTCTCCTGCCTCTTTCAGCTTCTTTGTCTCTGTAGTATCATCATCATCATCATAGTTTTTATTAATAAGTACTTTGTTAAGTAGGTTATTACTTTGGTCTCCATAACTACCATATAAAGAAAGTATTCATGTCTTCATTTTAAAGATAAATAAACTGAAACTCAAAGAGGTCCAGCAACTTGCCTGGGGACATACCACTGGCACATGGCCAGACTGGGGGAGAGCCACCGGTCTCTGTCTGACTCTAAAGTCCCTTCCTCTTTGTTACCTCCCAAAGCTGGGTCAGATTGTGGACCTTGATGAAGAAGATAGGGCAGCAGATGATGCAAAGGTGGCCCTGGAGGAGGAGGGTGCAGAGATGATGAAGAACTCTAACTAGGAAGGAGGGTGACAGTGGGGAGGAGAATCTGGCTAAGGCTGTAGGACTCCCAAAATGGCTGGCCTGGCCATTGTCCCCCTTTCCCCGCTCCCATGCCAGCTTCATCCCTGCTCAGGGCTTGAGTGAGGAACCATGATATTAGCAGCCGGGGACTGCCAGATCAGCCAAGACAAGGACCCAACTGTGGGTCAGGCAGAAAGCCTGATGTCCCAGGAAGGGTATCCATCCATTGTAGAGCTGGTGAGGTTAGGGCACAGTGGAGAGCCCTCCCCCTGGTGGTACAGATGGGGAAACAGGCCCAAATAAGGGATCACATGTCCAGCTGGTGGGCCGGCCAGATCTCCCCACTCCCAGGTCAGTGTGTTCTTGGCCCTATGGCTCCCCATTAGGCGACATTCCTCTCTCTCACGAGGGACTCCACCAACATGCTCACTTCTGCAAATAGCTGTTTTCTCCTTTTTGTCTCCATAGCTTTTTACCCTTTCCAGACTGCTCTCACAGCCATTCTGTTCCCCAGGCAGGGGAAGGAAAGCCCAGGGAAATTCAGTCACTTGTCAAGTCCTTCAACTAAGATGACCAGGCTGGACCACAGTCCAGGTCTCTGCCACCAGGCAAGGTCTAGAAGCTCGCCCCAAACACCCAGCCTTTCCCAAACCTCAGTAGAGTGTGACGCTGCTACAATTTAGGCCCCTCACCAGAAGTGCCACCACCTCTGAGCTGGCCCACAGCCTGCCACCCTTGCAGCGCTCCTACAAGTATTATCTGGGGTGAGATCAGTCCTCCTGAGCCCCTCTTTCCCACCCTTTCCTTTGCCTATTGGCCTTGCAGTCATCCACAGCAAGTGACCTATAAGCTCTCTGGACTTGCTTCCTTATCTTGGAAAAGGGGGCTCTTTGCAGTAGCATTCTATGGCTACCCTATTCCCACCTCCCCTGAGCCCCCTCCTGCCAAAAGCCCTATGCCCTTCGTTTGTCATTCCTAGGCTGGCATCACAGACACGGGTGAGCTCCCCATCGCCTGTTGCTGCATGCAGTGTGGGTCTCTGAGGGACTTGGCTGGAGGGCGTGTGGGGCAGGTGCTCCCTGTGGGGGTTGCCTGGGGTGGCAGGCAGCAAGGTGGCAGGGGGGGCCAGGAGGTCTGATCTTTAAGGGAAGGCTCAAAGCTGCACAAAGGGCTCAAAACTGCAGAGTCTCGAGGGCACTTGGACTGGTGCACAGGCTAAACCAATGCCCAGAGGAGAGGAGGAACTAATTCTAGGCCACACAGATGGCATGGAACTGGGACCAGGACCCACTGACTTTAGCTGGTGGTTTAGAATCCACAGGGGCCTCGTTAAAGATGACAGAGAAATTAGGATGTGGTAGATCTGGAGTGGGGCCTGGGAATCTGCATTTTCAGCAAGCCCTTGTGTGTACAGACGTGCATGCCTGTTTGCATGTGTGTGTTGGGGTTAGGATCTTGAAGCACAGCCAGCTGGGGCTGGACCACCCAGGGAGGAGTCACAAAGGTTTTCAGAGCTGGATTTGTGGTCCAGGCCTTGGGGGGCCAAAGCTGGTCATCCACCAGGGCCACACACCCGGCAGGAAGAGGGCAAAGGAAGTGCTGACCTAGGGGCCATTTGATTGTGCTGGAGCAGAGGCCACACTCTGTCCTTGCCTGGCCCAGGCTGGATGGGGAGCCCCCACTGCAGGCCACTGTGGCTCCTGTCCCCATCCTCCCCCCGGGCAGGCCCAGTGTCTAGACTCTCAGACTGAAATTGGTCTTAGAATTCTTTCAGCTACAATAACAAACACAATCAGAGAATCAACAAACATTGGGAGGTTCACGTTTCCAAGTTGGAAGGGACCTTATAAGTAAACGGTCATTTCTAGCAGACCGCCCATTGCACAGATCCATTCCCTGGCATTCCTGCCAGATGGTCATCCCACAACTGTTGGAAATGAGTAAGATCTGCCCTTCCCCATGCACCTCCTGCATGCTAGACATTGTCCATCTATCTCAAGTGAGCCCCTGTATGCCGCAGGGTTGGAGAGAACTACAAGAAACCTTGTACCATTTGATTGATAGGTTCTACTGCTGTTTCTGAGGCCAGATAGACCTGGTTTTGAATCCCACCTGCCTGATGCGTGGTCCTCTCTGACCCTGAGTTTTCTCATCTGTAAAATAGAGTGATAGTTGCCCAACTCCACGGGTCATTGAGAGATGTATACAAAGGGCCCAGCACATGGATGTGTTGGCTATTATTAGAATATTAATTTTCCCCATTTTACAAATACAGAAAATGAGGCTCAGAGAGGTGGGGAGACTGTCCTAGGTTACCCAGCCAGTGAGCAGCTGCACTCCACAACCCCAGAGGTTTAGTTTTAATGACATCCAGGAGCTCTGGGCTGGAACTCCTGACTGCCCCGAGACACCTCTGGAGTCACAGAGTGTACCTCTGTTGGGCTCCACAGCCCCTCTCCAGAGCCCAGAGAAGGGTGACAAGGTCTGTGGGCCAGGTCTTCACCGGCAGCCTTGCCAGGACAGAGAGGAGTAATTATGGAGCTAAAGCCCAACCAACCACACGTTAGGGTCACCTGGAAAACTATTCAAGTACCAAATTTTGAGACCCATTCTAGCGCCACTAAATTTGAATTTCTGGGGCCAGAATCTGCACTGTGAAAAAGCTTCCCAGGCAGTTCCAAGGCTGCTGGTCAGGCACTGGGAGCCATTGGCCTGTACCGTGCATGCATTAGGGGACGGGAGTTTGCTACCTCTCATGGTGGCCTAATCCACATGGATGGGACATTCTGCGCATCCCAAAACTGGAGAGAGAAAGCCTCCCATTTCGGTGAGTTACCCAAGGCTCTTCCCCTCTGTGCTCACCCCTGAAGAGCTGAGGGGGCTCCCCATTCTCCCTCCCACCCATTCACACTGGCATCTGGCCCAGAGGATTACTTATTAGGTGGCTGGGAGTGGCCCGCCCCTCAGCAGACACCTGTTATAGGAGCCTGGACTTCCCCCTTAGCTCCAGCGTCCCAGGGGCCTGTAAATAATTCATCCCCAGCCCTCTCCCCACCCCACTGCTCTCACACACCTCCCTGCCCGCTCCTTCCCAGGCTCCAGAGGTATCTTGGGGCAGTTGGGAGTTCCAGCCCAGAGCTGGGACTGGAGCCCAGGGCTCCTGGGGCTGTCATTAAAAATACAAATTAACACATACACTTGATAAAGATTTAAAAAACCCAAAGTCTCCCTCCTACCTGTGGCTTTCCAACCTCCAGTGCCCTCTCCAGAGGCAGCCCCTATTACTGGCTTCTTGTATATTCTTTCAGAAAGAACTATGTTTGGGTATGTGTGTGTCTCCCCCATTTTTATACACAAATGGTAACATACTATTTACACTATTCTGTCTTGCTTTTTTTTTCACACGTCTTAGAAATTGTTCCATACTGGGATATATGGGGTTTTGAAATTTCTTTTTAATGACTGCATAATGCTCCTCTCCACGAATGCACCATCCCTTCTCTCACCAGCTCCCTGCTTGTACACGTGTACATTGTTTTTTGTCTTGTGTTATCAGAAACAGATGGAGCTTTGGGCAGCTCTTGGTCGGATCAGTTACTGGAAGTGGGATTCTTCGGTCAAAGGGTATGTGCCTGTTAAATGAGGCTAGATATCGCCAAGTTGGGCGCTAAGGAGGATGTTTCAGTTCTCACTCCTGGAACAGCATATGGGATTCCCTGGTTTCTGAGCCACACGGTGTGATAGCAAACATTTTGTTCTTTGGCAGAGCCATTTTCTTGCACGAAAATTGTGTGTTTCAAGCAGCTCCACCAGAGAGAAGTTGGCCAATGGGTTCCTGAGCCCACCAGCTCCTCTCCAGAGCCCAGAGAGGAGTGACAAGGCCTGTGGGCCAGGTCTTCACTGGCAGCCTTGCCAGGAGAGAGAGGAGTAATTGTGCAGCTAAACCCTATCTCCATCTGGTCTCACTCCTGACCCCCTCCCTTGTGGAAGAGCTGGGCCTGAGGTCAGAAACCTGAGTCCTGGTTCATACCATGACCAGTCAGGACAGCCCTCTGCAAGTGCCCTTTCTGAGCCCATTTCCCCCCACCTATGAAATGGCTCTCATGGGTCTGGGCTTGCTCGTCAGAAGAGGCAGGAGTGGGTGCTAGGACTCTAAGGAAAAAGCACCTTCAGGACCACTGCCTGTCATCCCTAGGCGAAGGTCTGGGTGGGCAGGGAGCCTCATGCCCTACCTCAGGCCTGTCCTCCTGGGGGTGGCTGTGAGTCCTCTGGGCATTTTAAGGGCCCCCAGCCTGGGGCTCTCAGTAGCCTTCCCTCACCATGGTCTGGGCTCTCCTTTCCCAGAAGTAGCAATGGAGGGGTGGTCTGCTATTTAAGCTTCTGTTACCAACACTTTGGGGGCTCCATGGCAGGCTCAGTGGGCCCTAAATTTGGCAGCATGCGGAATTGTACCCTGGAGAGGCAGCAAGAGCTCTAGGGCATGGGGCATGGCCTTGGGCAGGCCCGTGCCTGCCTGGGCCTCAGTGACCCTGACTACACAGGGAGGTAGGACTGGAAGGGCTCACCAGGCCTCTTCTTTGGCCCTCCAGCTGCCATGCAACCATTGTGAACCCCGATCTCTTCCTCAGTAAAGTGCGAGGAGACTAAACTCTCACAACCGCTTCCAGCTTTAGCCCAGTGAACCCAATGGGTCTGTGGATTCAGAGCCATGTTGGCCTCCAGTGCTGGTGGCATTAGGCAGAACTGTTTTTGAGCCGGCGTTGCATTTTCTAGGCCAAGGAGGGGCCCAATCTGGAGCCAAGGCCTGGGCAGCCACTCCCTTATCCCTTTCCTGGGGCCAAACCTGGCTGAAGTCCGAGGCTATCCCGTGCTATGCTGGGCAGCGGACTGAGGTCAGTGGACATGGAAGCGTCCAGTGTGGTTCCTCTGCTCTGGCAGGAAACCCAGGGAAAAGCTGCCCAGGAACATCTGCTGCCTCCCATTCTCCACAAAGCCATTTGGCTCACGGAGAGCCCAGTGGCTGTCCTGCCAAGCTGCGTGGGCTTGGTGGAGGGGGACAGGCGTCAGAATGGGGGCGGGTGAGTGGTTAGTACAGGGGTGCTGAGGGACAGGCAGGGCCAGGGCTGAAACCCAAGAAGATGAAGGCTGGGCTGTGGTGGGGACACTTGCGAGAGGCGGGAGGGGTTGATGGTCTTTCAGAGACCCGCCATGCCCTGGTGGGAGCGTGTGCGGGTCTGGAAGTGCTTGCGTGCGCCTCCTATTTATAGCCACGTGCTCAGCTTCTTATAAAGGAAACTGGTGCTTAGCCAGGCCCCACACAAGCCCAGGCCAAGCATGACTCTTAGTATTCTCTCCAGACAGACCTCTGATCCCAGTCCCAAAGAAAGTCCTGACATTAACCTCAGCTGGTCCTCAAATCCAGCTCTGGGCCCCAGGCTGAGCCTCATAAAGAAGCCAAGGCACCGCCCTCTCTCCTGGGTTACGGCAGCTCTCCCTGCACTTCCCCTTCCTCTTGCAAATCTGTTCTCCATGCAGTAGCCAGAGTAATATTAAAACCTACATCAGACTTCATGTCTCCTCTGCTCAGAATCCTGCAATGGCTCCTGTCCCAGACAGAGGAAAACCCAGAGTCCCTCCCCTTGTCTCCTGTCCCGTCCCCCTTCTCACTGCACCTCAGCTCCACCAGCTTCCTCACAGCTCCTCACTGTCAGACAGCAGGCAGACAGCAGGCATGCCCCACCTCGGGGCCTTTGCACTTGCTGTTCCCTCTGCCTAGAAGCCTCTCCCCAGATGTCTGCATGACTCTTTTTTTTGTTTATTTTTCTTGAGACGGAGTCTCACTCGATCACCCAGGCTAGAATGCAGTGGTGTAATCCTGGCTCACCACAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGTTTTCCCGCCTCAGCCTCCTGGGTAGCTGGGATTACAGATGTATGCCACCACGCCCGGCTAATTTTTGTATTTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCACGTGATCCACCTCCCTCAGCCTCCCATAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCCTACATGACTCTTTCCTGTACCTCCTTTACACCTTTGCTGAAATTCCCCTTTTCAGCAAGGCCTTCACGGCCCATTCTATTTAAAATCACAGACCACCTCCTCCCTAAATTCCCAGTCCTCCTTCCCTGCCTCCTTTTCTTCTGAAACACTTATCAACTAGTGTATCAAATATTTTATGTTTATTTTTCTTTTCATCATCTCCCTCCCCTAGAAGCTAAGCATCACGAGGGCAGGGGTTTTATTTTGCTCAGTGCTGTAGCCCAGAGCTTGGCTCACAGCAGGAGCTCAGTGAGGATCTGTGGGATGAGCTGCATCTCTCCTGCCCGGTGCCTGGACACAGGGGGATGTGTGGACGGCTTGGGCAGACCAGCCTCCGGCCTCTGGTGCAGGCCCAGCTCAGGGCTTGGTATCGTGAGCCAGAGCCTTTGAGGTAACTGGCAGGTCCTAGGGGTCCAGCAGCAGCCCCAGTCCTCCCTGTCTGATGTTGAGGCCATCCCCAGGCATTCGGCAAGAACTAGGGAGCCCACACCTGGGACAGTTCCAGATTCTTTCTGCTTCCACCTCTACCTGTGGTGGCTCTTCCCTTCTCTCTTCTCTTGCACAGGAGGAAGGAGCAGCTGCCATCTCATTAGTCTTGATCACCCTTGCCTGCCCGATATCCCCTCCGTGTCTCCAGCATTCAAACCTATCTGATATCTGACCACAGAGTGGAGAGTTTGTTAAAAATGCAGATTCCACCCCCAGGCTTTCTGACTAACTGGTCAGGGATGCCCAGAACCTGTGTTCTTCACAAGCTCCTGGAGAATGGCTGCTGTGCAGCCACATCTGGAAGCTGCTGGTTTAAAGTTGTTGGAGCTGGCCTTCAGAATAGGGCTCTGGGTCAGGAGACCTGGGCTGAAGCTGCAGCTCCGTCAGCAGCCTGCTGTGTAACCCTGAGCTGGTTGTTTTGCCTACCTCACTGCCTCCCTGATGGGCATGGGAGGAGTACTTGCCTCCCAGACTGTGAGTCTGTGGGTCTGAGTCTGGGAAATGACTGTTTCCCTTGAACCTGGAGTGTATGTCTCTCCCCACCTCAGGGTCCTACTTCAGGGAGCCTGGATTGTCTTCCTCCTGGGGGTCCTGCCTGGGCCTTTTTTGTAGCCTCCTCCTCTCAACTCACCTTCCTTCCCGGCTCCTTCTGCTTCTCAG
Seq C2 exon
GTAAGACTCGGACCAAGGACAAGTACCGCGTGGTCTACACCGACCACCAACGCCTGGAGCTGGAGAAGGAGTTTCATTACAGCCGTTACATCACAATCCGGCGGAAATCAGAGCTGGCTGCCAATCTGGGGCTCACTGAACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113722-CDX1:NM_001804:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=WD(100=90.6)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)