MmuINT0033993 @ mm9
Intron Retention
Gene
ENSMUSG00000024619 | Cdx1
Description
caudal type homeobox 1 [Source:MGI Symbol;Acc:MGI:88360]
Coordinates
chr18:61180028-61195853:-
Coord C1 exon
chr18:61195330-61195853
Coord A exon
chr18:61180174-61195329
Coord C2 exon
chr18:61180028-61180173
Length
15156 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
ATTGCCCTTCTGCTCCTCAGGTA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCAGTCGCTGGTCGTCGGGGCGGCCGGCCGGGCGCGGCGGCTCCAGGGCCCAGCATGCGCGGGGGACCCTGCGGTCACCATGTACGTGGGCTATGTGCTGGACAAGGACTCCCCCGTGTACCCAGGCCCCGCCAGACCCTCCAGCCTCGGCCTGGGCCCTCCGACCTATGCGCCCCCTGGCCCGGCGCCCGCGCCCCCGCAGTACCCCGACTTCGCGGGTTACACGCACGTGGAGCCGGCGCCCGCGCCCCCTCCGACCTGGGCTGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCAGCTGCCTATGGCCCGGGCCCCACGGCCTCAGCCGCCAGCCCGGCCCCGCTGGCCTTCGGGCCCCCTCCGGACTTTAGCCCGGTGCCCGCGCCTCCCGGGCCTGGTCCCGGCATCCTGGCGCAGTCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACGAATGGATGCGGCGCAGCGTGGCGGCTGCAGGCGGCGGTGGCAGCG
Seq A exon
GTAAGGACCCTTCTCTCCCGTGGGAGCCTCCAGACCTGACAGGTGCCTGGCGAGGCCCAGGTCTCCTTCTTTGACCTTTGCCCTGGCCCTGATTGGCTTCTCGAGAGTGGGGCCCACGACCACTCTTGTCCTGAAGTCATTTTGTTTCGCCCTGCTTTATCTCTAGGCTTTGAGAGCTTTGAGTAACTCAACTGAGTCCTTGTGTATAGCTGAGGAAACTGCTAACCCGGGAAGAGAGGACGTTGGGTCTGTGTAAGTGGCAAGGCCACAAGTAGAAGGCCAGATGCCCAGTCGTCGCAGCAGTACCCGCACTGCTGATCTTCATCACCTTCTTCCACTCCTAACCCTGCCACAGACACTCACCCAAGCACCTATCTTGCTGTGGGCATGTGGGATCTTCTTTCCCCTCCAGGACCAACTGGTTCCCTATCCTACAGTGAAAGCGATGCGATCCTTTCCTTTGGTTGACGAAGTTCCCATTGGTTGCATAGGGACAGGGGTCCCTACCTAGCCTCCCCAGGACTCTCCCTGAACTCTTGACCCCGGGGGAGGGGCAGTAGGAGCAGTTGGGAAGGTGGCTGCTGTTTGGTTCCTTGGCCTGTGAAGCGCCTGCCCCCGGGCAGGCCCCTCTGATCCACCCCTCTTCAAAGGCAGGGGAGGGGGCTGGACAAAGGCCCAGCTTAATGAGGGACAGCCTGACCTTTATGCACCCCCCCCCTTTGTCATGTAACTGCCTTTGTTTTAGCTCAGTAGTGACTCCTGTTGGCAGGAAAGTGAACAGGACACCTCATTGTCCAGATTGTGTTTGGCCTGTCCTGACAAAGGCCACCTGGCCTTGAGGGCGGGAAGCTGGCCTGCCTACTCTTTGATGTCCGACCCTTGCTTCCCTTCTCCCAGCTGGGGGCAGGCCTGGGACTTCCTCCACCTCCTCTCCCTTCCCTCCATTTCTCCCACACACCCATCTACTCCCCTGGGTAGCTGCGAGCAGGGTTTGATTAGTGTCTTCAGGCCTCGGTTGTAGTCACACCCTTCCTTAGAAGTGCAAGGGACACTGAAACTCCTGTTTGTCTCCAGAGATATTTGAGGGGCAAGGCTGTTCACTTCCGTGCCTTGAGTAATAGCAGCTAATAATATGGAACTCTTATATAACATGTTGCTGTCTTCCCCCCTATTTGGAAGATGAGCAAGCTATAGTACAAACAAGGTAAATTCTGGCCCAAGGCCACAGCCAGGAACTCGTGGGGCACACTAAACACCATACCGGTTCTAATCCTCTGCTCAAGCAATTCCCAGGGTCTCTGTTTTGTGATCAATGAAACAAGGAGCAGGGAGAGGTTACATGGTGATGTATATACCCTGCTTCTAACTGTAGAAAAGAGTCTTGGAAAAACTAATGTATGTTCCATCCTTTGGAAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGGAAGGACAGGTTGTGCTCTGAAGCCTGGCTCGTGAATGCAGGGGGCAAGCTTTACACTGGATGACAGGATAGGAGGTGTAAGAGCCTTGCCCCCAGCCGCCTGTGTGGTCTTCTTTGGAAGTCAAGGACGGGAAGCACCTTTCCACTCTTCCACTAGCAGCTTCCTGTTGGTCAGGTGACTCAGGGGAGGATCAGGCGGTTCCCCTCGGGGAGAGCACTGGAGAAAGGCCTTCATAACGAAGCTGTATGAGCAGGAGGGAGTGGACCAGTGGGGTAGTAGTCAGAGGAGTGGGGAGTCTGACAACTTGGGGTGATGTGATGTGAGGAAACCTCCTTTATCTCTGGGCATGAACCTGAAAACCCAGCTGCCCTCCTGGCCTCCTGTCTCGTGGAGATGGGGCCATGAACGCCCAAAGGCGAAGCAGTTTCTCTCTTAGCTCTGAGAGTCCAGGCCAGGACTAAGGGTTTGGATTCCAGGAAGGGCTCTTTTTCAGGAACCGGATTAGACAGGCCAAAGATGCAGTAGTCTGGACCTTCTGGTCTGCTCAAACCACATGACTCTCACTAATGCTCCTGAAGTAAGGCAGAATGGGAGCTGAGGGAAGGGTATAGACTCTCCCCATGGGAAGAGCCCTTTGCCTTCTCTGGCTCAGTTTCTCCTGGGTACTGAAGGTACAGCCTCCCAGAAGTGGCTCATATGCTATGCAGTGGTCTGGGACAGCTGAGGGAAAATCACTGCCTGCCTCACCCTCCAGCTCACACCGACTCTGTCCATATGGTGTTCAGCCTGCTACCTTTCTTCCTTCTTTTGAGCCCCAAACAGCCTAGACTATCTGCACTGGACAATTAAAGGGCAGATGTGCCGATGAGGAACGTAGGGTTGAGATGCAGATGAATCAGCTTAAATTTTTTTTTTTTGGTGGTTTCCAACTCCTTCCTCAGGTCTGTGAGACTCTATAGCACCAATGCTTGGTTCCCACCCACCTCTGGACCTCACCCCGGGCCACTCCCTTTGGCCATCATTGCCCCAGCACCCAGCCCTCTTTTTTAACTCCTCAGGTCTGCCAAGTCTTGTTTCAGGTCTTGTGTACACATTTGGTTGTGGCTGCCGTTGCTGTTTCTCTTCCCTCTGACTCTCTGCACGCTTGCCTGGCTCCTTCTCGCTTTCTGTGCATGGCTGAAGGAGAGGCCCTCTGTGATTCCCAAGTCACACTTTCCACCTCCGCTGCCTTGGATGGTTTCTGATGGGTGCCCTTTAGAACCCTGTCAAATTCCAGCGTGCCCTCCACTTCCATGTATGTTTGCATGGTATCTGCTCCCAAAAGGTCTAGAGCCATGTCTGTCTGACCTAGGAACAGTTGGGGCACCTGCTCCGTGTCTGCCTGGTACCAAGCATATGCTCAGAGCCTTCAGTTGGATGAGTGAGCCAGGAAAGCAGAGGGCCGGGAGACATCTCTGGAGAGATCAGGAGAGGGATGAGACCCCAGCTTCCACAAATTTCTAGAGTCCGTCTCTGGGGCTTGGACCCATGCCTGCCCAGACAGCATTTCGGGCTAGTAGCCAAAGATTGGATACCCTCCCCACACTTGGTCAGTGCTCCCGACTCTAAGCAATTGGAGCAGCCAAGGCCAGACTGTGATTTGATTTGGTTTTACTCTAGGAAAGGGTGCTGGAACGTATGAATGGGGGAGGCAGTGAGCCCCAGTTAGGCTACAATCCAGGAATAAAGGGTTACCTGGCTCTGAGGGAGCCATGTCACTTCTGAAGTCAGTGGCATCCACAGCCCAATCAATGCAGTACTGAAGACACTCTCCCAGTCGTTTGCTTAAAAGCTCAGGGACTTATTGGAGACTGTTAGAAGTTGAGGCTTGAGAGACTTAGCTCTGGGATTCCAATTCTCTTAGATGCCACATAACCAGAGCCTTATTACCCTGGGTAATTTCTCCTCCTCCTCCCCCTCTTCCTTCCTCTCCTCCTCCTTCATCATCATCATCATCATCATCATCATGGTTTTTCAAGGCTGGATTTCTCTGTGTGGCCCTGGCTGTCCTGGACCTCATCCTGTAGACCAGGCTGATCTCAAACTCAGAGATCCTCTCTCTGCCTCCTTAATGCTTGGATTAAGACATGCACCACCACAGCCTGGCCTTTTGGTTACTGTTGTTATTTTATAGAATTTTTACTTATTAGTATGGGAGGCTGTAAGCCATAGCATGTGTGGAGTTCAGAGGACGACTGAGGCCGAGTTGGTTCTCCTTCCACCTTGGCAGAGGCTCGAGGAATCAAAGTCAGGTGGTCAGGCTTGAGTAGCAAAGGCTTTTACCCACCGAGCCTTTTCACCGGATTACGTGCTAGAAGCCATAGTGTTGTTAAAGCACAGCTCGCCCTGGGCAGGTGGCCAGGGCTCAGGGACACTTCTTGGCAGGTGTGAACAGGTGTGAACAGGTGTGAACAGGCTTCACACTTTCTGCATGGACATCCTGGGACCTTTATCCGCCCTACCCTCTCTTCCCTCTACTGCATCTTTAGCAGTTCAAGTGCCACTCCTTCTCCGAGGCTGCTTTATCCAGGAAACCCTCCTTGATTCACCCCACACCAAGTGAAGGGCAGTCATAGCCTACTGATGGCCCCTTGTTTTAAAAATCTCTATCATACCTATGTCTATCAAGTGGCATATTTCTGCCAGTCGCCATCTGTAGTCCTATCAAGGACCAGTCCTAATCAACCCCCTCCTGCTCTGGTGTGCACATAGTAGGAGCTTATCATGTAGGCACTATGCTAAGACCTCCTTTTGAGCCACTTTACTTAGGCCTCATACCTACCCCGAGAGATAAAAAGCTCTATCATTGGACACGTTTTACAGATAAAATCGAAGAGGCTTAGAGAGGCCATGTGGCCTGCCCAAGCTCACACACCTAGGGTATGACAACATTCAGTTCCAACCAGGATCCACAGCCTGCCAAGGGTTTGTCAAACAAAGCAACAGACTCAAGGACCCAGCCCAAGATCTCTCCTTGGCTGCTTGCTTTCCGGCCAGTGCCCACCCAGGTGAGGGAAATGAGGCCAGCAGGGAGGAGCTGAGTAAGTGGGGACAGAGAGGGGAGAAGAAAGAAGGCGGGCTGACTCTTTAAAGCTGGTTTTCCCTGCAGCAGAAGCTGCACCTGACACCTCAGCTCTCAGATGTAGCTGGGAATGACCTAGTTAGAAAGTGGCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTTGTGGAACGTGTGTCCCTTTTCCCCAGCAGATCTTGTGCTTTAGAGCCTCAGGAGTTGTTCTGACATCCAGACAGCTTTGTTAGCATCTGGGGCCAGCTTTTGGGAAGAAAGTCCTCTTCTTGGACAGGCCTGAAGCTCCTGGGATTCACAAACAGCCATAACATCTGGGGTCAGGGTCATCACCATGTGTTGCTGCCCTTTCCCCGGGTCTCCCCCGTCAGGCCTCATCTTGGCATAAGCAGGAAGGAGAAGTCTGAGCTTGTCACCCTCAGGCCTGCCTGGGCTCTGAAATCAACCCCAGACCCCCTCAGCCAGAGGTTCTGGTAGTCCTCTAGCCACAGCTTGTGCCTCCCCTCTGTCCATCCCTCCGTCCCTTATCCATCCTTCCAGGCAGGTGGGTAATGCTATTCTCTTCTGTGCTGAGGGTTCAGTTGGGTGATGGGAGCTATGGCTGAACAAAGGTGGGGTCTTTGCCTGCCCTCAGAGAACTGGGATTCAGCTTCCCACTTGGAACCTCCATCCAAATGTCTTTGCGTAAGCCATTTTCTCTTTCTGGAGTATTATTCCCATATCTGACATGGAAGCTGCTTCCTTCTCAACCTACAGCTCTTGGTCTATAAGCCACTTCCTCCAAGAGATTTTCCCAAGGCTAAGTGAAGAAGTTCCCCCCTGTAACCAACTTAGCCCAGCCTCAGCTCCTTATCCGTGGTCCTCTGCATTCCTGATCACTGTTGGTAGTTGCTTAATTGGTGTGCTTGGTTTTTTGAAGGCCTGCCATGGAGCACAGACCAGACTAGTGCTGAGCAACCAGCACAGTCAAGACGAAATGAGCTGGTGTCTCCTAGGCACTCGGGGTGTGTGCTCAGCCACTCTTCAAAAGCAGCATCATTGATCCTAGAATGGGACACTTTTGGACTGGCATTGATGAGCGAAGATGAGGAAGCAGTAACACCACGCAGGAAGGGCTGCTTTGGCGGCTGAGCCATCAGTGGAAGGGATGGCGTTGCACTCCGGACTGAGGGTCCTCACAGGATAACTTTGGAAGGATGAGAATGGAGCAGCTAGTGTGACCTCAGTGTAGTGAGGCAAGCTAGGTAGCTAGGGCTCCTGGTCCCCGGTGGGCAGTGAGCTGGCAGTGGCATCTTAGAACTTCCTGTCACTGAGGAAGTGCAGAACACACAGCAGTTGAGCACTTGAAAACTGGTTAATGCCACAAAGAAAACAAATAAAAACAAAAACCAGAAAGGTTCTAGTGGCTTATATGGGGATGTACCAGCAGTATATGGCCAATCTAGGTGAAGACTTTCAGGACCATCTTACCCTAAACTTTTAAACTTAGTCTATTATTTTATGTGTATGAATGTTTCCCCATGTGTGTCCCTGGTGCCCGTGAAGATCAGAAGAGGGCATCAGATTCCCCTAGAGTTAGACTTACAAATGGTTGTGAGCCTCCATGTGGGTGCTGGGAATTGAACCCAGCCCTCTGGAAGAGCAGCCAACGCCCTTAACCTCTGAGCCATCTCTCCAGCCCAAGTTTCTAAAGTTCCTTGTTTTTGCTTCCTCCCAAAGCCGGGTCTGGTTGTGAGCCTCAAGGAAAATATGGTGGTCCAGATGCACAGGTGGCTTGAGAGCTGCCGGGTGCAACCATGATGGATGACTCTGAGTGGGAAGAAGAGGTGGTGGAAGAGGGCCCTCACCAGGCTACCGATTTCCTCATGAGGCTTCCTCAGACTTGGCTGTGCTTAACCCAACCCTGTCAGCCTCATCCTTCCTCCAGGGCCTGAGTGAGGAGCCATGACACAATAGCCTGTAGTTTCCCCTCATCTAACACAAGAATGAACAGTGGGCCTAGAACGCCCCATGACTTCAGAATGGCTTCCAGTATCTTGAGGACAGGCAGGGCAGGAGCTGCTGCAGCAGAGACCCTGCAACAGGTGACACAGACGGGAGAAAAGGCTGGAATTGAGATGGCATGGCAACAGATGGCATAATCAGATCTCTACACTCTAGGGTGTTCTTTGACATGTGACTTCCCATCAGGCAACATTCCTCTTGTTCCCAACAGAGAGCTCTACCATCCACTTCTTCAAATAGCTCAGTTCTACTTTTGGGGTGGGAAGTTGGGGGCTTCCATAGCTCTTTGCCCTTTACAAAGTGTTTTCACATCTATTCTGTGTTCTGGGCAGGGAGGGAACCCAGGAAAGCTCAAACACTTGTCTGGTCCTTCCACTAAGTATACAGACTGGCCCACCTCTCTTGGTGCTAGGTTTGGATCCGCAGTGAGCACCTGGCCTTTGCAGATCTTGGCATAGTGCTAACTCCACGGGCTTGCTCAAACCCTGTCACTTTTTGGTAGCCCCCCGTGTTAATCTGGATGACATCCCCAGGGTCTTTAAAGTTATCTCTATGCTCAGCATACTTGGAATTCTTTCTTCTCATATATCTTTTCTATACAAAAGATGGCCACTCTGTGCTTGTCTGTCTTCCCAGGACACACCATCCAGCTCTCTTTGAGTAGATGGAACATGAAGGCACAGAATGGAGAAGAGGGGTCCTACCAAGGGTCAGGGGCAGTGTTGGCACAAATCACCCACGCCAGAACTTATTCTCTGGTGTTCTTCCTCTGTCTCCACAAGACTTGGGAAAGGCATTGGCCAATGGTCCTCCGGGGGTGGCAGGAAGCAGGTCCTCCAAATACCTTTGACCCCACCCCCACGCCCATCTTTCTTCCCTTCTCTTTGTTCCTTGGCTCTGCAGCTGTCCCCATCACATGACCCAGTGACCCTTCTGGATCTGTTCTCTCATCTCCATCTTGAAGTGGGATCCAACGGCTTCCTTTCCCACCTCCCTAAGCATCCCCCAAGCAGGCACCACAGACATAGGTGGGCAAGCCATTGCCCCCCTGCTCTACTAGGCGGGAGGATATATGGGTGTGCCCTCCCTATGAGTGTCCCTGGATAGTGGTGAGTAGTGAGGCAGACTCAGAATGGCATGGAACTTGAGCATAGAGGGCCTGTGGTCTGGGGCTGCAGTTCAACGGAAGAGTGCGTACCTAGCATACATGAAGTTCTGGGTTCCATATCTTGGTGCTGACACCCATCCCTCATCAGGAGAGAATGAGACCCACAGGTGAGGGACTTGTTTAAGAACACTTCAGTTGGAGCTTGCTAAAGATGAGGGGGCAGAGGTGTAGCTGAGAGGCAGAGCTGAGCTTGACCCTTGGTAACATTATCACCGCTCCCCCCGCCCCCAAATGGTAGAACCTAGCAATAGGTATTTTTAACAAACTCCCATACACACATGTGTTGGGGGGCGGGCTGTGTATGTTTGCCTTTGTGTGTGTGTGTGCACGCTGGGTGGGAGTGTCATCTTAATGTACAGCCAGAGGAGGTGGCCCACCTAGTGAGAGGTCACAGAGGGTCTAGGCTGGACTCCTAATAGGCCCACATCCTGATAGACAGAGTTAGTCAGCCCTTGGAGCCGCAAACCCAGAAGTGCTGACCTAGAGACCATTTGATTTTTCTGGGAGTCAGTCTGTCTTGGAGCAGAGGCCAGGCTCTCCTTGTCTGCCCTGGGCTGGATAAGGACCACAGTACAGGCCACCGCAACACTATCCTGTCTTCCAGCTGGGCAGGCCTGTTGTCTAGGCTTTCAAACTGGGAAATCAGCCCTAGATTTCTTTCAGCAATAATAACAAACACAATCTAAGGATCAACAAACATTGGGAGCCTCCTGCTTCCAAGTTGGAAGGAACCTTACAAATGCAGCATACCAGTAGGACACAGCCCCATTTTCTGGCATTCCCACAGGGGCCACCCCACCGCTGTTGGGAAAGAATAGGCTCCATCCATCTCTGTGTGTACCTGCTGTATGCCAGGTATCGCACAAGGAGCCCTCTTCATCTCGGGTGAAACTGTACATCCCAAGGCTGGAGACGATTGTGGAAAGCCATTCTCTGTGTGATGGGCTCTAGTGTGTTTCTGAGAACAAATAGTCCTAGCTTTTTAAACATGTTTAACTACATCTGCTTTGGCCTTGTAGGTCCCAGGGATGGAATTCAGGACACCAGGCTTGGCAGTAAACAGCTTTCCTGGGCCATCTCCCCCTCCCTAGATGGTCTTGAATCCCATTTTTTTTTAATGTAAAAAAAAAACGGATGCATAGCTGGTGTGGTGGTGCATGCCTTTAATCCTAGCACTTGGGAGACAGAGGCAGGTGAATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAAAAAAAGTTCCAGGACAGCCAGGGCTGTTACACAAAGAAACCTTGTCTCAAACAACAACAACAACAACAAAACCCAATCAATCAACCAACCAACCAACCAAACAAACAAACAAAAAAAACCCAAGTTGTTGAGGCACATACACAAAGTGTTTGGCCCATAGCCACCATGACTGTCCTTAACGGTTATCTCCATTTTACAGATTCAGAAAATGAGGCCTAGGGAGATGATCCTTAGCCACCCTGGCATGTGGGTCCCCTGTATATCCGTAGAGGTCTGCTTGTTCAAATAAGCACATAGCAGAGACACCTGGAGAGCTAACCAAGGACCAAACCCCGGGAGCCAGTGTCAGCTCTACTCGCTCCAAATCTGGGGGCCAGGATTTTCAGGACAGCTCACCAGGAGTTCCTGCCTAAGGGCCGTGCACTGGGAGCTGTCTGCCTGTGGCTTCTCCGGACCTTAAACCGCACATGCTTTAGAGATGTGGGGATCCATCCGCACCTCTCATAGCAGCCCGTTCGACGGGGATGAGACATTCTGCGGATGACAGAACTCGAGCGGAGGGTGAGCTTTCCATTTAGGGGAGTGAGCTGGGGCTCTGGCCACTATGCTCAGTTCTGATGGTTTGCACCCTCTCCCCTTACCAACTCTCACTGGCATCTTGCCTACAAGTTACTCATTCTGAGCCTGGGAGTGGCCGGCCCCTCATCAGACACCTGTTGCAGGAGCCTGGACTTCCCCCTTAGCCCCAGTGTCCCAGGAACCTGTAAATCATTCACTCTGGCCTCCTCCCTGCTCTGTGCCTCTCATGCACCACCTTGCCCTTCCTCGCTAGGTTACAGAGGGGTCTCGGGTGCTCACAAACGGTTATCAGGGAGGACACAGGCTTGAGCTCTGGCCAGAGCTTCAGAGCCCAGGGCTCCTGACTGCCAATAAAAGTACAGTTTCCAAGGATGAGGAGAGGCTCACAAGGCCCCACCTCTGGTTGAGGAGCTATTGGCAGTTGACGGCCACTGGGGAAAGGAGAGTCATTTTTCTTTGGTGTGGCCACTATAGGTTGCCCATGCCCCAGTGGATGAGCGCACACCCACGCACATGCAAACAGTACTAGGTGGACTCTGGGTTAGAGGAGAAGGAAGAGGAAGAAGAGGAAGGAGAGGGGCAAATGCAGGTGGGAAAGAGAAGGGGGATCTTAGAGGAGCTGGAGGAAGGCACAGGGGTAGATACGATCAAAATCCATTGTATACATGTATGAAGTTCTAAGAGAATAAATAAAAACATTTAAAAAAAGGGGGGGGAGTTCAGGGGCTAGGAATGTAGCTTAGGAAAGTGCTGTCTCAGCACGCACAAAACCCTGGCTTCAATTCTCAGCATAAGCCGGGTGTTGCAGTCTACACCTGTAAGCCTGGTACTTGGAGGTGGGGCCAGGAAGACCAGGAGCCTAAAACCATTCTCACGGCATAGTGAGTCCAAGACCAGCTTACAAAATTAATTCAAGTTCAGACCTGGTGATGCAGATCTGTAACGCTACCCATGAGAGGCCAAGGCAGGAAGCTTTCAAGTTCAAGAACTGCCTGGGCTACAAAGTGAATTCTGGGTTTGCCTGGGCAACTCTGTCTCAAAGTTTAAAAAGCACAGAAATGGCTGTCGGATACTTGCTTGCGGTAGAATGCTTGTCTATCATGACGAGGCCCTGGAGTCAGCTTCTGTGAAACATACATGCACACAGACATACACATGCACACACAGTCTCTCTCACACACACACGCACATGCACATGCACACGCACACACACAATCTACAAATAACACACTGGACATTTGCACACAAAAAACCCTGAAACCCTCTAAAGCCCAACCCCCCACACCAGCTTCTCACTGCCATCTGCCTTCCCAGAGAGGGCAGCTTCTGTTGTTGGCTTCTTGTATATATCTTCAGAAAGAAAAAGAAAAAACCAACTAACCAAAAAAAATTATACACATCTACGATGATATGACACTTTTTTTTTTGAGACATGTTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTTCCTCTGTAGACCAGGCTGGCTTCAAACTCAGAGACAGCCCGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGTGTGCACTACCACCGCCCAAAATTATGGTGTACTTTTAAGTTTTTTTTTAATTATACATTTTCATGTGTGTATATATGTGTATGTTCATAAACAGATGTGTTCACCTGTACCTGGGCATGCGGGGACCAGAAATTAACTTTATAATAGAATATCTTTCTCTATTGCCCTCCAATTTGTTTTTTTTTTTTTTTTTTTGAGGCAGGGTTTCTCACTGAACCCACAGCTCAGCATTTCAGCAAGACTGGCTGGGCCAGGGAGACCTAGGGGCTCATCTCCACCCTTTACCCGCAGTACTGGGATTCCAGGTGAGGGAGCCACCATAACCGGCTTACGCAGGTGCTGAGGATCTGAACTCAGGGCCTCATGCTTCTGTAGCAAGCGCTTCCTGCACGGAGCCATTTCCCCAGCCTCGGAGCAGGCTTTGCTCATAGCATCCTGTGTCTCGCTCCCTCGTACACATGCCTCAACAGTTGCTTTGTGCTCCTCTCCCTGGGTGTCCCATATCTTAGGTCAGGTGCTCCTTACTCAGGGACATGGACACTGTGCTAGTAGCAGCATTCACTGTCTCAGGCAGTTCTTTGTGAGGTTATGCCCTAGAAATAGAGCTTGTGGCCCAAAGCCCTGTGCATACAAAGCCAGACGACATGGTGGTTAGTTCGGTTCTAGGAACATGCTCTATCTAGTTAGGGCTAACCCTGAACGCTATGTTCAAATGCCTTGTTTCTGGGTTGTACAGGAAATCAAACATTTTGTTTATTGCCAGACTGTTGTCTTAGAATCAATCTGTATTCTTCAAGCAGTTGGACTATATAGAAGTTTGCCGATAGCTTCCTATTCCTATCAACCCCTCTCTAGGCCTATGGACTAGGGCTTCCCCAACCCTGGTGGGGACAGAGGCGCTGCAATGCAGCCAACATCCCATACTGTCTAGTTACCGTTTTCCGTTTTAGGAAGAGCCAGCTGGAGGTCAGGATACCCTACTCTCGGGTCATGTCATCACCAGGCTGACGGCCTCGGAGTGAGCAGTTTTCTGTGGCCTGGCTCCCAGCTGTAAATGACTGTTGTGGGTCCCTTCTGCTCATCACAAGGAGTGGGAGCAACAGAGATGGAGACAAGCACAGAGAGGGGCAATCGAGTTAGGTACTGAGAGAACAGCTGTCCTCATGGCTGAGCCTGGGCTCTCACAAGCAGAGCTCCATCTGCTGTTTAGCCTATCCTCTTAGACACCTAGGAGTCTTCCTGGATTTTGAAAGTTCTAACCAAAGGCCATCAACTACAGTCCAGTCCAGGTTTTACAGTCCACCCTTGCTGTGGTCCGACCCTCCATTCTAGGGAATGGACACAGAGGTATGCTCTTCCCTGTGAGCTTCTATTGCTTAAACTTAGGATGTTGGGTAGCTCAGTGGTCCTTAACTATGGTGGGAGTTGTGCTTTGAAGGCAGCAGAGAGAGCTCTAGACTAGAGGGCGACCTTGACTGCAGGAAGGTTGGACTAGATCTAGCAGGAATGCCTAACCTTCTGACGTTATTACATGAAGTAATACACTAGAATTATAAAGTTCATAGAATAAATACATCAAGTAACCTGAAGGTGTGTAGGACCGCATTCATAGTTACCTCGGGACCCTTGTGATTCACAGCTGCAACTGGACGTGTCTGGAAAAACCCCAGCAACCACATGACCACCTTAAACAATGGGCTCGTCATCTGTAAGATGGCAAGGGACTGAAATCCCAGGACTCCTAGTCTCAGTTAGTGATCCCAGTGGGCTATGGGTTCAGAGCCCAGCTAGGCTGTGATGGTAGTAGCCTCCGGCAGAGCTGTTTCTGAGCCAAGATTGACTTTTCTAGGTCAAGGAGAAGCCACACTTGGAGCCAAGGCCTCTGCAACCTCCCCGTCAGCCCCTCCTCTAACCAGGCCTGGCACAGGCCTGCAGGCTGCCCTGAGCTCTGACTCTGCTGTCAGGAGGTCCTGCAAGCTTTGTGCATATGGAAATGGCCAGTGTGGTTCTGCTGCTCTGGCAGAAACCCAGGGAGAAGCTGCCTAGGAACAGCTCTTGTCTCCCACTCCCCACAGTACCACTCGCCTGGGGAAGAGCTGAGGTCTTTCCTGCCAGGCTGTGTGGGGATAGATGGGTGGAGGTGGGCCAAATGCAGGTCTTTAGTGCAGGGGCATGGGGGGACAGGAAGAGCCAGAGCAGGGAGTCAAAGGCCAGGCTGTTGTAGGCACTGAGCAAGAGAGGTTCTAGGGTTATGGCGAGATCCATTGTGCCCTAGCATGTGTGCACGCCTACTGTCAGCATGCACCTTCTAGTTTGGCTGTGTGTTTAGCTTCTTCCAGAGAAAGCCAGGCCCCATTCCGTAATTCTTGCCCCCCCACACCTCCCACCCCCCACTCCCGCCCAGACAGCCTTCCAAGCTCTGTTCCAAAGACAACCCTGATGTCAATAACCTCAGACAGCCCTTAAGTCCAGCTCCTGGCCCAAGCAACACCATCTGAAAGCCAAGTCACCACCATCTTGTCCTGAGACATGGCAGCCCCCACCACCCCCACTCTTCACACAGCAGCCAGAAAAACATGAGAGCCTGCAGCAGACCACATGTCTCCTCTGCTTAGAGCCCTGCAGTGGCTCTCCCATTCTAGAGTGAAACCTAAGCCCCTTCCCTTGACATCTGTCCCGGCCCCCTTTCTTCTTTGCTTCCTTACTCATTCTCGGACATATCCCTACCCTCAAGGCCTTTGCCCTCCAGGTTCACTTTGCCAGATTCTGTTTCTCTGGGTATCTACATGGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCGACTAGGCTTCAAGAACCACTGTGTTGGATTTTTGTTTTGTTGTTTTTGGAACTGGGGGCGGGGGGTCTCACTATGTTACCTGCGCTGATCTTGAATTCTTGGATTCAAGTGACCCAGCCAAGTAGCCAGGACAGTAGGTGCCTGCCACCTGACTCCGCTAGCACCACTCTGAAATTCCCACCGGCAAATTCTTGGGCTCCCTGTCTTCTTTCTTTTCCTCAAAATAATTGTCAGTGAACGAGGCTTTCCGTTTTTATTGTCTTTCTGTCTGTCCCCTTCCCCTAGCATTCAAGCAAGGACTTTTCAATTTGTTCCCTGCCCACCACAGTGTGTAACTTGAGACAGGAACTTGGTTCATCCAGCAGAACGAGCTGAGTCACTGATGCTCTGCGTATGGAACACAGGAGGGAGTGTGGACAGCTCTATTGCTCAGGCCTATGGCTCCCGATGCAACCCTAGAGTAGGGCATGGTGTTTTGAGTGTTCCTTCTGGGCACCTTGCAGACCCAAGGGTCTACCAGCAGCTCTGGGCCTTCCAGTTGTACTTTGGGCTAGCATTCAGTAGAACTGGGAAGCCCCAAATTAAAGGGTACTTCCAAATCCTGTTTTCCCTTGCACAGGAGGGAGGGACATCTGGTAATCCCCTTTATCTCTAGTCTACCCTCACCAGACAGGTGTCCCCTCACCATCCAGGTGTCCCCTCACCAGACAGGTGTCCCCTTCACGACTCATACTCAGACTTATGGTCTGGGGCCCCCTGAGTCAAAACCATCTGGAAAGTTTGTTACCACACAGCTCTGAGGTCCTCCGAGTGAACAGTTGGGGGGAGGGGGGATCTCCTGAAGCCTCGCTTGTCACAGCTGACATAGCTGGCTTCAGGCCACAGCCTTGTCATCCATCAGCTTTCAGTCAGGCGCTGTCTGGTCCTTCTTGAACATCTATCACACTCCCCTTCCCTCATTGCCCTTCTGCTCCTCAG
Seq C2 exon
GTAAGACCCGAACCAAGGACAAGTACCGTGTGGTCTACACAGACCACCAACGCCTAGAGCTGGAAAAGGAGTTTCACTACAGCCGGTACATCACTATCCGGCGCAAGTCCGAGCTGGCTGCTAACCTGGGGCTCACAGAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024619-Cdx1:NM_009880:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=WD(100=90.6)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: