HsaINT1007107 @ hg38
Intron Retention
Gene
ENSG00000113722 | CDX1
Description
caudal type homeobox 1 [Source:HGNC Symbol;Acc:HGNC:1805]
Coordinates
chr5:150166795-150182913:+
Coord C1 exon
chr5:150166795-150167321
Coord A exon
chr5:150167322-150182767
Coord C2 exon
chr5:150182768-150182913
Length
15446 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CGGCTCCTTCTGCTTCTCAGGTA
3' ss Score
8.33
Exon sequences
Seq C1 exon
CAGGTGAGCGGTTGCTCGTCGTCGGGGCGGCCGGCAGCGGCGGCTCCAGGGCCCAGCATGCGCGGGGGACCCCGCGGCCACCATGTATGTGGGCTATGTGCTGGACAAGGATTCGCCCGTGTACCCCGGCCCAGCCAGGCCAGCCAGCCTCGGCCTGGGCCCGCAAGCCTACGGCCCCCCGGCCCCGCCCCCGGCGCCCCCGCAGTACCCCGACTTCTCCAGCTACTCTCACGTGGAGCCGGCCCCCGCGCCCCCGACGGCCTGGGGGGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCCGCCGCCTACGGCCCGGGCCCCGCGGCCCCTGCCGCCAGCCCAGCTTCGCTGGCATTCGGGCCCCCTCCAGACTTTAGCCCGGTGCCGGCGCCCCCTGGGCCCGGCCCGGGCCTCCTGGCGCAGCCCCTCGGGGGCCCGGGCACACCGTCCTCGCCCGGAGCGCAGAGGCCGACGCCCTACGAGTGGATGCGGCGCAGCGTGGCGGCCGGAGGCGGCGGTGGCAGCG
Seq A exon
GTAAGGACCCTTCCCTCGCCCTGCGCCTCTGGACCTGCAGGTGCTCGGGCGCGGCCCAGGCCGCCCCCTGTCTGACCTCTGCTCCGGCCCTGCTCGGGTTCCCGGGAGTGTGGCCCTCCTGTCCACTCTCGCCCTGGGGGGCTGCTCTTTGGCTCCCTCTCCTCAGTCTCAGGCTATCGGAGCCTTCAGCAGCACAGCCTAACCCTCTCTCTGTACAGATAGGGAAACCGAGACCCCCTGCGAAGTGCGGAAATGCGCCTGCGGCCGCGGAGCAAGACCCGAACTAGAACGCAGGCTCCCAGACTCGTGTCCCACACTCATTTAGCAACACCGACTCCGTGCTCTTCATCTGCTTCTTCCACTCCTAACCCAGCCCTAGGCAAAGGCGGCAGGTTCGCCCCAGAAGGGACGATTAACTAACTGTGTGAACAGGGCAGGTGACTTTCCTGGCCAGGGCTGGGTCTCCCCATCACACAGTCAAGACATTGCTGGGTCATATCCTTCAGGCTGAAAAAGAGCCCTCTTTGGCCAGACTGGGGCAAGGGGTCTGTACCTTACCTTCTCAGGGTCCTCCCTGAACTCTTGACCCCGGGGGAGGGGAAGCGGGAGCAGTGGGAAGGGGGGCTACTGTTTGGCTCCTGAGCCTGTGAACCTCCTGCCCCCAGGCAGGCCTCTCTGATCCGCCCTCTTCAAAGGCAGGGTAGGGGGCAGGACAAAGGGCCCAACTTTAATGAGGGGCGGCTTGACCTCCGTTATGGGTCCCCCCTTTGTCATGCAACTGGCTCTGCCTTGGCTCGGTAGTGACTCCTGTTGGCCGGAAAGTGAACACGACGTTCCATTGTCCGGACTGTGTCCGGCCTGTCCTGACAAAGGCCACCTAGCCTTGGGGGCGGGAAGCTGGCCTGCCCACCCTTTGATGTCCAGCCCCTCCTCCCCTTACCCCAGCTGCGAATAATCCTGGGACTTCTCCCACCTCCTCGCACTCTTCACCCCCATCTCCCCACACACACCCAGCTTGCCTCGGGGCAGATGCTGGGTTGGCCTTGATCAGGAGCTACGGGTTCTGGCCATAATCATATCCCCTTTTTGGAAGTCCCGGGGATACATAACCTCCTATCTGCCTCCAGGGAGATGCAGGGAACCAGACTCTGCCACTTGCTTCTGTGGCCTTGATTAAATAACAGCTAATGTTTTGGAACACTTAACTAACGGACCAGGCATGACCTAAGTAAGATCTTGCATGCATTAACTCCTTTAACTCTTAAAACATCATCGTAGGTACTATTATCACCCCCATTTTAAGATGAAGAAACTATGGCATAGAGAGTTTAAGTACTTGCCCAAGGCCATATAACCTGTAACTAGTGGGGCTGGGATTTGAACCCAGGTGGACTAACCACTAAGTCTGTGCTCTAATTCTCTACACAACAGCTCCTCTTAAATCAGTCATCTTTTCTGGGTTTCAGTTCTACTGTCTGTGAAATTAGAGAGAAGGGAGATTATGCAGTGGTTTGTACCCTTGTTTAAGTTACAAAAGGACTCCTTTGAAAAATCTGCTGAAAGGTACAAATGTTGCATCATTGGGCAATTTCAGGGGTTCTGGAGGCTACCAGAAGCTTTATCCATAAATCCGGGGTTAAGAACCCTGTGTTCTATGAGAGGAGGTGGTGGCAGCACCAGTGCTCAGGATCCTGCAGTTCCCAGTCTGTGAGGCTCTGGAGAAGGAAGCCTGTGTTTCCTGCTCCTGTGTTCCACTTTCTGCTTCCTGCTCATGGGGTGACTTTGGAGATGAATGGGGAGGTTCCCTATGGGTAGGGACTTGGAGAGAGGCCATCACTGTGTAAGGGAAAAGGAGTGTGTCAGTGGGGGTCAGGGGACTGGGTATCCTGGAGGAGTTTCCAGGAGCTTCCATACAAATCACCTCGTGTCTCTGGGCACGAGAGCTGCTGAACCTGGCTCATCCTCTGGTCTCAAAAGTCGCTTGAAAACTGTTGTCTGCAGGCAGATGAGTCTACCCCAGGCAAAAAAGCATTTCCCCCTCCTTGCTCTCCGAGAGTAGAGGGAAAGGCAGAAGGAGGTCTGGGGGTTCCCAAGGCTCCAGGAAAGGGACTTCCCTGGAGCCAGGTTAGCCCTCTTCCGCAGAGGATGCAGGAACCCTGACCTTCTTGAAGCCAGAAGGTGCTGCCTGTCTTCCCAGGGCATCTGACTGTCTATTCAGTGCTCCTGAAGTGGGGGCAGAATTGGGTTGGCACTGTTGACTCTCCCTGAGAGAGAGGCCAAGCCCCTCCTGTCTTTGGCCTCAGTTTCTCCTTCTGGGCAATGAAGGCATAGGGTTTCCAGGGGTGCTTCCTGTGCAATGCTGCTGTCCAGGACAGCTGAAGGAGGATCAGTGCATGCCACTGCCCTCCTAATCCCCACTGGCACTGGCCACCAGGTCTTCAGCCTGCCACCAATCCTGGCTAGCCCCCTTTTGCCCCACTTCTGAGCCTCCAGCATTCGAGAGTGGACAAACTGGACAGTTAGAGACCACACATGTAGACGAGGGAACCAAGGTACAGAGACTGTGAAGAATGTTCCAGTTTCACACAAGCGGGGCTGAGCTGGGCTAGATGTCAGAAGAATTGGTTTAGAATTTTCCTATGGTTTCCCATCATATGTAGGATAAACCCCACATTCCTTCCTGAGGTCTACAAGACTACAGCATTTGCACCTGCCTGCCTCCCTGACCTCATCCCCGGCTGCTCTCACCTTGGCTTCCAAGCTCTAGCCATTCCAGACTTCTTTTAGTTCCTCAGACCTGCCAAGTCCTACTGCAGATCTTGTGCACATGCTGTTCTCTCTTCCAGGAAAGCTCTTTCCCCTGATTCTTTGCAAGAGTGGAACCTTCTTACCCTTCAGATCTTAGTTTCATCATCACCTCCTCTGTGAAGCCCTCCATCATTTCCCAAAGTGGACTCCCCACTACACCCATCACGAATCTTTGCTGTGTTTCCTTCAGAGCACTAATTCCAATCTACTCACTTCCTTACACTTGTTTGTATGTTGTCCATTCCCGTGAGGTCCAGAACTATGTCTGCTTAACCCACTACTGCATCCTGGCACCCAGCTCAGTGCATGGCATTTAGTAGGTGCTCAATATATTTTGTTGAGTGAATGAACAGGGCAAGTGTGAGGGACAAAAGGCATCTCTGGGGAACAGGGGAGTGGGTGAGATCTTGGCTTTCACACAGGTTTCTGAGGTCCCAGCCCTAGGATTGGGACCTGTGACTGTCAAGCCAAGCAGTTCAGGTCAATGGAAACCTGGCTGCCTCTGTCTCTCCACTTGGATGGTACCCCAACTCACCTGGGGAAGTGGGGTTGCTGAGGCTGGGACTAAGACTTCAGTTTCTTCTAAGGAGGGGGCAGTGACAATGGGAAAGATGAGAGAGAGGCTGTTGGGCTTCAATCAGTCTCCGATTCCAAAAGACAATATTAATCAGTTATGAGTGATCAGCATCATTTGACTGAGGCCAGGATAGGAAATGACTACAAGACGTTCTTTTTTTTTCCTTTTCTCTTTGCATTTTCATGAGGAGGGTTTTAAATATCATCATTTTCATTAGGATGGTTACGCATCATCCTTCCGTGGAAGGCTCAGCCTCCAATTCCTTTGAATAAAGCTGCTCCACAGGTTAATGGCCCATTGGGGTGGCTGAGGTCTCAGGACTGGGGAGATGTTCACGTGGATGAGACTGTGGGAGCAAGGTTTAGATCTTGGTCCAACCCTGTCAACTTTCAGATGGGGAAACTGAGGCCCATGAAGGATATGAATCCTCCCCTCCCCCCACATTGCAGGTCCTCTCCCTTGGCCCATTGCCACAGCCACCAACCTGCTGTCTCACCTTCAGCCTTTCTGTACTGCTCCAGCTATCTTCTAAAACCATTGCCATATTTACCTTCTCAAGGCACATGCCCTGCTCAAGAGCATTCTGTGGCTCCCTACTGACATGGAATTGCCATTTCATTTTATGCCATTTCTTTTTTCTTTTTTTTGAGACAGAATCTTGCTATGTCACCCACGCTGGAGTACAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTGCTGCCTCAGCTTCCCCAGCAGCTGGGACTACAAGCGCACGCTGTCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGTGTCCGGCCTTTTATGCCATTTCTTTGTTGTAAAATCCAGCTCCATTTCTATGGCAATCAGAGCCTTCTTGAGAACTGGCCTCAACCATCTATTGAAGCCATTCTCCTGCTACTTTGCCTAGATAAGGCAAGTTAAGAGCCAGGGCTTGGGAGTCTCAGAGCTGGGATTGCATTTCCATAAGAAGCTGTATAGCTTCGGACAAGTTAATTTGGATCATTTCTCGGAGCCTGGGCTGCTTCTGCTGTAACAGGATAATAATAGGATTGCATCTCAGAAGAGATGCCTGTAAAGCACCGCCCTGCCGCTGGCACACAGTAGGTGCTTAGGGCATCGGTGCCTGTGACCACCTCTACCAGTCCTCAGCAGGTGCACTGGAGCACACACCTCACACTCCCAGCCTCTCTAGTCTGGTCCCTCGGCCTGCATTGCCCTCCCTTCCCTCTCCTGCATCTTCACCAGCTCAAATGCTGCTCCTTCTCCGAGGCTGTCTCCTGTAGGAAGCCCTCCCTGATTCCTCCTCCCAAGCACTGTATCAGGCCCTTGTTTTCATGACACTTACCACTGCCTGTCTACTTTCATTGTCTTGTTTATCCCTGCCACTGACCATCTGTAGTCCCTCAAGGACCAGTCCTAATCAGTCCCATCCTCACCCTGTCTTGCACATAGTAAGAGCTCGTGATAAAGCAAATAACTGTGGCATTGGCTAAATCTTTACTGTGTGCCAGGCACTGTGCCAATAACTTTGCATGGGTGATCTCACTTAAGTCTCATGATAGCCCTGAGTGGTGTAAGGATCTAGTATACTCATTTTATAGATCAGGATAATGAGGCTCAGAGAGGGTAAGGTGGCCTGCCCAAGCTCATACAGCTAGGACATGGCAGCACAGTGTTTACACCCAGTCTACAGCCCAGCAATCGTCTGTGAAATAAAGACACACTCACGAAGGGGAGCCTGAGACCCCCCCTTCCCCATGGGCATCCCAGCCAGGTTGGGGGGAAAGGAGGCCAGGCAGGGGATGTACTGTAAGAGGCTGGGGGAGGAGGGGGCCCAGCAGGGGCCTGGCTGTTTAGAACCGATTCTCCAGGCAGAAGCTACATTTGACACCTCATCGCTCAGATATAGCTGGGAAAGGGAATGACCCAGTTAGAAGGTGGCAGAAGGCTTTTTTTTGGTTGGGTGTTTTCTCCCTGCTGCTTTGGCAGATATTGCTGCTCAGAGCTTGGGGAATCATTGTGAAGGTCCAAAATGGTTTGTTAGCAGCAGGGTCTGGTGTGTCCATAGGAAGTTATCTTAATGGGCCGGCCTCTCAGGTTTTTGTGTTGGAGCTCCTGGGATATGGAAACAACATTCACATCTGGAGTCAAGGCCGTCACCATGTTAGCATGCCAGACCCTCCCCATGCCACGCTCACCCCTCAGGCTTGTGGGGGCACCCCACATGGATCCCCCCCATCAACAGAAAGAGGGAGCAAGCTAGGCTCCACACCCTCCCATGGCTTCCTTTTGTTCTTGAAACCAAATCCATATCCCTCTCCTACAGAATCTGCTGGCCTCTCCAGCCCCATCTTGTGCCTCTCTCATTCATTCATTCATTCAAGCAGGCAAGCAGTAATATTCTCTGAGTGAGTGTCTTCTGTCCTGAACTTGCTCCTAGGCATTGGAGATGATGGCCTGAACAAGGCAGACGGGTCCACCTGCATGCAGAGAGCTGCCCTCTCTGCCCTCACTCTGCTCCTCCCTGCCTGGGGGCCTTTGTACCTACTGCTCACTCTCCCTGGAATGTCTTTCCCTGTTCATGACATGGAAGCCTCCTTCTCAACCTCAGGTCTTGGCTTAAATGTGGCCTGTTCCTGGAGACCTCCCCCAGCTAAGTAAAGTAGCGTTCTTCCCCTCACCTCACCAGTCGGTTTAGCTCATTGCTCACTTTCCTTCCTGCTGCTAATCCCAGTTTGTCATTATTTCATTTGTTTGTTTTTAATCTACCTCCCCTGCCATGAAGGAGATAATGAACTATTTATCAAATAAGTACTAAGCAGTTATTATGGTAATCATAATGCGAACCAGCATCTATTGGGTGCTCAGTGTGTTCAGCATTTTTTCAAATGCAAGATTTCTGTCCCCGGAACAGCACATTTCTTCTCCATCAAATGAGTGGCTGGACTAAGCTTTAGGAGCAATGGAGATGGACAGAAGGCTGTGCTTTGGAGGCTGAGCCACCAGCTGCTGGAGTGGACTTGGGGAGCAAGGGAGACAGGACTGAGAGGTGCCACCTTGGCTTTTGATCTGAATGGCTGGAGGATGGAGGTGCTGTTTATTGAGTTAAAGAAGCAGAGGAAGTAGCAGGTTTGTTTTATGTATTCACCAAGGATTCATCAAGTACTCACTGTGTGTGTCAGGCACGTGATAGGTGCTGGTGAGCTAAATGGCATGGCCCTACCCTCAAAGAGCATTCAGGGAGCCAAGGCCTAAGGGGAGGGTCTTCACCAAGGTCACACAGCCAGCTAGGGGTAGGAAGGGGCTGGAGGCAGAGCCCCTCACTGCAGCCCCACCTCGAACGTGAGACTTCGGGAGCCACACCTACAGTGGAGTAGCAAGGGCTTCACTCTCAGACTAGTCTAGTGGAAGATGGCCAGGGGGGCAGTGGCCTGGAAACTCCACCAGGAAACAGTTCAGAGAGGCCTCAAGTTCTTCGGCCTCAGAGAAGACCTGAAGGGATGCAGTTGCTGTTTGTAAATCTTAAATGGCTGTCTTGGGCTCAGGGTGCCCCTGTGGAAAAACTCAGGAAGGATATAAATGGGTGGCAGATGCAAGAACTGGCTGCTTTGCAGCTAGTAGGCGTGTGCTGCAGTGTGGGCGTCCGGACCCTGGTAGGAGTTTGATCTAGCAGCGTTTGTCCAGTAGGACTTTCCGCCAGGATGGAAATGCTCTGTATCTGTGCTGTCCAGTAGGCAGCCACCAGCTGCACATGGCTGTTGAACACTTGAAATACAGCTAGTGTGACTGAGAAACAGAATTTTATATTTTATTTAATTAATGTGGCTAGTTGCTGTCATATTGGACAGTGCAGAAAAATCTCTCTCAAGAGTTCCCAGAATGGAAATCCATTCTGCATAAGCTCCTTGTTCTTGCATTGAGGAATCTCTCCTGCCTTTTTTTTTTTTTTCCTGAGATGGAGTTTTGCTCTTGTCGCCCAGGCTGGACTGCAATGGCGCAATCTCGGCTCACTGCAACGTCCGCCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCACACGCCACCACGCCCAGCTAATTATTGTATTTTTAGTAGAGACAGAGTTTCATCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCTCGCCTGGCCTCTCTCCTGCCTCTTTCAGCTTCTTTGTCTCTGTAGTATCATCATCATCATCATAGTTTTTATTAATAAGTACTTTGTTAAGTAGGTTATTACTTTGGTCTCCATAACTACCATATAAAGAAAGTATTCATGTCTTCATTTTAAAGATAAATAAACTGAAACTCAAAGAGGTCCAGCAACTTGCCTGGGGACATACCACTGGCACATGGCCAGACTGGGGGAGAGCCACCGGTCTCTGTCTGACTCTAAAGTCCCTTCCTCTTTGTTACCTCCCAAAGCTGGGTCAGATTGTGGACCTTGATGAAGAAGATAGGGCAGCAGATGATGCAAAGGTGGCCCTGGAGGAGGAGGGTGCAGAGATGATGAAGAACTCTAACTAGGAAGGAGGGTGACAGTGGGGAGGAGAATCTGGCTAAGGCTGTAGGACTCCCAAAATGGCTGGCCTGGCCATTGTCCCCCTTTCCCCGCTCCCATGCCAGCTTCATCCCTGCTCAGGGCTTGAGTGAGGAACCATGATATTAGCAGCCGGGGACTGCCAGATCAGCCAAGACAAGGACCCAACTGTGGGTCAGGCAGAAAGCCTGATGTCCCAGGAAGGGTATCCATCCATTGTAGAGCTGGTGAGGTTAGGGCACAGTGGAGAGCCCTCCCCCTGGTGGTACAGATGGGGAAACAGGCCCAAATAAGGGATCACATGTCCAGCTGGTGGGCCGGCCAGATCTCCCCACTCCCAGGTCAGTGTGTTCTTGGCCCTATGGCTCCCCATTAGGCGACATTCCTCTCTCTCACGAGGGACTCCACCAACATGCTCACTTCTGCAAATAGCTGTTTTCTCCTTTTTGTCTCCATAGCTTTTTACCCTTTCCAGACTGCTCTCACAGCCATTCTGTTCCCCAGGCAGGGGAAGGAAAGCCCAGGGAAATTCAGTCACTTGTCAAGTCCTTCAACTAAGATGACCAGGCTGGACCACAGTCCAGGTCTCTGCCACCAGGCAAGGTCTAGAAGCTCGCCCCAAACACCCAGCCTTTCCCAAACCTCAGTAGAGTGTGACGCTGCTACAATTTAGGCCCCTCACCAGAAGTGCCACCACCTCTGAGCTGGCCCACAGCCTGCCACCCTTGCAGCGCTCCTACAAGTATTATCTGGGGTGAGATCAGTCCTCCTGAGCCCCTCTTTCCCACCCTTTCCTTTGCCTATTGGCCTTGCAGTCATCCACAGCAAGTGACCTATAAGCTCTCTGGACTTGCTTCCTTATCTTGGAAAAGGGGGCTCTTTGCAGTAGCATTCTATGGCTACCCTATTCCCACCTCCCCTGAGCCCCCTCCTGCCAAAAGCCCTATGCCCTTCGTTTGTCATTCCTAGGCTGGCATCACAGACACGGGTGAGCTCCCCATCGCCTGTTGCTGCATGCAGTGTGGGTCTCTGAGGGACTTGGCTGGAGGGCGTGTGGGGCAGGTGCTCCCTGTGGGGGTTGCCTGGGGTGGCAGGCAGCAAGGTGGCAGGGGGGGCCAGGAGGTCTGATCTTTAAGGGAAGGCTCAAAGCTGCACAAAGGGCTCAAAACTGCAGAGTCTCGAGGGCACTTGGACTGGTGCACAGGCTAAACCAATGCCCAGAGGAGAGGAGGAACTAATTCTAGGCCACACAGATGGCATGGAACTGGGACCAGGACCCACTGACTTTAGCTGGTGGTTTAGAATCCACAGGGGCCTCGTTAAAGATGACAGAGAAATTAGGATGTGGTAGATCTGGAGTGGGGCCTGGGAATCTGCATTTTCAGCAAGCCCTTGTGTGTACAGACGTGCATGCCTGTTTGCATGTGTGTGTTGGGGTTAGGATCTTGAAGCACAGCCAGCTGGGGCTGGACCACCCAGGGAGGAGTCACAAAGGTTTTCAGAGCTGGATTTGTGGTCCAGGCCTTGGGGGGCCAAAGCTGGTCATCCACCAGGGCCACACACCCGGCAGGAAGAGGGCAAAGGAAGTGCTGACCTAGGGGCCATTTGATTGTGCTGGAGCAGAGGCCACACTCTGTCCTTGCCTGGCCCAGGCTGGATGGGGAGCCCCCACTGCAGGCCACTGTGGCTCCTGTCCCCATCCTCCCCCCGGGCAGGCCCAGTGTCTAGACTCTCAGACTGAAATTGGTCTTAGAATTCTTTCAGCTACAATAACAAACACAATCAGAGAATCAACAAACATTGGGAGGTTCACGTTTCCAAGTTGGAAGGGACCTTATAAGTAAACGGTCATTTCTAGCAGACCGCCCATTGCACAGATCCATTCCCTGGCATTCCTGCCAGATGGTCATCCCACAACTGTTGGAAATGAGTAAGATCTGCCCTTCCCCATGCACCTCCTGCATGCTAGACATTGTCCATCTATCTCAAGTGAGCCCCTGTATGCCGCAGGGTTGGAGAGAACTACAAGAAACCTTGTACCATTTGATTGATAGGTTCTACTGCTGTTTCTGAGGCCAGATAGACCTGGTTTTGAATCCCACCTGCCTGATGCGTGGTCCTCTCTGACCCTGAGTTTTCTCATCTGTAAAATAGAGTGATAGTTGCCCAACTCCACGGGTCATTGAGAGATGTATACAAAGGGCCCAGCACATGGATGTGTTGGCTATTATTAGAATATTAATTTTCCCCATTTTACAAATACAGAAAATGAGGCTCAGAGAGGTGGGGAGACTGTCCTAGGTTACCCAGCCAGTGAGCAGCTGCACTCCACAACCCCAGAGGTTTAGTTTTAATGACATCCAGGAGCTCTGGGCTGGAACTCCTGACTGCCCCGAGACACCTCTGGAGTCACAGAGTGTACCTCTGTTGGGCTCCACAGCCCCTCTCCAGAGCCCAGAGAAGGGTGACAAGGTCTGTGGGCCAGGTCTTCACCGGCAGCCTTGCCAGGACAGAGAGGAGTAATTATGGAGCTAAAGCCCAACCAACCACACGTTAGGGTCACCTGGAAAACTATTCAAGTACCAAATTTTGAGACCCATTCTAGCGCCACTAAATTTGAATTTCTGGGGCCAGAATCTGCACTGTGAAAAAGCTTCCCAGGCAGTTCCAAGGCTGCTGGTCAGGCACTGGGAGCCATTGGCCTGTACCGTGCATGCATTAGGGGACGGGAGTTTGCTACCTCTCATGGTGGCCTAATCCACATGGATGGGACATTCTGCGCATCCCAAAACTGGAGAGAGAAAGCCTCCCATTTCGGTGAGTTACCCAAGGCTCTTCCCCTCTGTGCTCACCCCTGAAGAGCTGAGGGGGCTCCCCATTCTCCCTCCCACCCATTCACACTGGCATCTGGCCCAGAGGATTACTTATTAGGTGGCTGGGAGTGGCCCGCCCCTCAGCAGACACCTGTTATAGGAGCCTGGACTTCCCCCTTAGCTCCAGCGTCCCAGGGGCCTGTAAATAATTCATCCCCAGCCCTCTCCCCACCCCACTGCTCTCACACACCTCCCTGCCCGCTCCTTCCCAGGCTCCAGAGGTATCTTGGGGCAGTTGGGAGTTCCAGCCCAGAGCTGGGACTGGAGCCCAGGGCTCCTGGGGCTGTCATTAAAAATACAAATTAACACATACACTTGATAAAGATTTAAAAAACCCAAAGTCTCCCTCCTACCTGTGGCTTTCCAACCTCCAGTGCCCTCTCCAGAGGCAGCCCCTATTACTGGCTTCTTGTATATTCTTTCAGAAAGAACTATGTTTGGGTATGTGTGTGTCTCCCCCATTTTTATACACAAATGGTAACATACTATTTACACTATTCTGTCTTGCTTTTTTTTTCACACGTCTTAGAAATTGTTCCATACTGGGATATATGGGGTTTTGAAATTTCTTTTTAATGACTGCATAATGCTCCTCTCCACGAATGCACCATCCCTTCTCTCACCAGCTCCCTGCTTGTACACGTGTACATTGTTTTTTGTCTTGTGTTATCAGAAACAGATGGAGCTTTGGGCAGCTCTTGGTCGGATCAGTTACTGGAAGTGGGATTCTTCGGTCAAAGGGTATGTGCCTGTTAAATGAGGCTAGATATCGCCAAGTTGGGCGCTAAGGAGGATGTTTCAGTTCTCACTCCTGGAACAGCATATGGGATTCCCTGGTTTCTGAGCCACACGGTGTGATAGCAAACATTTTGTTCTTTGGCAGAGCCATTTTCTTGCACGAAAATTGTGTGTTTCAAGCAGCTCCACCAGAGAGAAGTTGGCCAATGGGTTCCTGAGCCCACCAGCTCCTCTCCAGAGCCCAGAGAGGAGTGACAAGGCCTGTGGGCCAGGTCTTCACTGGCAGCCTTGCCAGGAGAGAGAGGAGTAATTGTGCAGCTAAACCCTATCTCCATCTGGTCTCACTCCTGACCCCCTCCCTTGTGGAAGAGCTGGGCCTGAGGTCAGAAACCTGAGTCCTGGTTCATACCATGACCAGTCAGGACAGCCCTCTGCAAGTGCCCTTTCTGAGCCCATTTCCCCCCACCTATGAAATGGCTCTCATGGGTCTGGGCTTGCTCGTCAGAAGAGGCAGGAGTGGGTGCTAGGACTCTAAGGAAAAAGCACCTTCAGGACCACTGCCTGTCATCCCTAGGCGAAGGTCTGGGTGGGCAGGGAGCCTCATGCCCTACCTCAGGCCTGTCCTCCTGGGGGTGGCTGTGAGTCCTCTGGGCATTTTAAGGGCCCCCAGCCTGGGGCTCTCAGTAGCCTTCCCTCACCATGGTCTGGGCTCTCCTTTCCCAGAAGTAGCAATGGAGGGGTGGTCTGCTATTTAAGCTTCTGTTACCAACACTTTGGGGGCTCCATGGCAGGCTCAGTGGGCCCTAAATTTGGCAGCATGCGGAATTGTACCCTGGAGAGGCAGCAAGAGCTCTAGGGCATGGGGCATGGCCTTGGGCAGGCCCGTGCCTGCCTGGGCCTCAGTGACCCTGACTACACAGGGAGGTAGGACTGGAAGGGCTCACCAGGCCTCTTCTTTGGCCCTCCAGCTGCCATGCAACCATTGTGAACCCCGATCTCTTCCTCAGTAAAGTGCGAGGAGACTAAACTCTCACAACCGCTTCCAGCTTTAGCCCAGTGAACCCAATGGGTCTGTGGATTCAGAGCCATGTTGGCCTCCAGTGCTGGTGGCATTAGGCAGAACTGTTTTTGAGCCGGCGTTGCATTTTCTAGGCCAAGGAGGGGCCCAATCTGGAGCCAAGGCCTGGGCAGCCACTCCCTTATCCCTTTCCTGGGGCCAAACCTGGCTGAAGTCCGAGGCTATCCCGTGCTATGCTGGGCAGCGGACTGAGGTCAGTGGACATGGAAGCGTCCAGTGTGGTTCCTCTGCTCTGGCAGGAAACCCAGGGAAAAGCTGCCCAGGAACATCTGCTGCCTCCCATTCTCCACAAAGCCATTTGGCTCACGGAGAGCCCAGTGGCTGTCCTGCCAAGCTGCGTGGGCTTGGTGGAGGGGGACAGGCGTCAGAATGGGGGCGGGTGAGTGGTTAGTACAGGGGTGCTGAGGGACAGGCAGGGCCAGGGCTGAAACCCAAGAAGATGAAGGCTGGGCTGTGGTGGGGACACTTGCGAGAGGCGGGAGGGGTTGATGGTCTTTCAGAGACCCGCCATGCCCTGGTGGGAGCGTGTGCGGGTCTGGAAGTGCTTGCGTGCGCCTCCTATTTATAGCCACGTGCTCAGCTTCTTATAAAGGAAACTGGTGCTTAGCCAGGCCCCACACAAGCCCAGGCCAAGCATGACTCTTAGTATTCTCTCCAGACAGACCTCTGATCCCAGTCCCAAAGAAAGTCCTGACATTAACCTCAGCTGGTCCTCAAATCCAGCTCTGGGCCCCAGGCTGAGCCTCATAAAGAAGCCAAGGCACCGCCCTCTCTCCTGGGTTACGGCAGCTCTCCCTGCACTTCCCCTTCCTCTTGCAAATCTGTTCTCCATGCAGTAGCCAGAGTAATATTAAAACCTACATCAGACTTCATGTCTCCTCTGCTCAGAATCCTGCAATGGCTCCTGTCCCAGACAGAGGAAAACCCAGAGTCCCTCCCCTTGTCTCCTGTCCCGTCCCCCTTCTCACTGCACCTCAGCTCCACCAGCTTCCTCACAGCTCCTCACTGTCAGACAGCAGGCAGACAGCAGGCATGCCCCACCTCGGGGCCTTTGCACTTGCTGTTCCCTCTGCCTAGAAGCCTCTCCCCAGATGTCTGCATGACTCTTTTTTTTGTTTATTTTTCTTGAGACGGAGTCTCACTCGATCACCCAGGCTAGAATGCAGTGGTGTAATCCTGGCTCACCACAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGTTTTCCCGCCTCAGCCTCCTGGGTAGCTGGGATTACAGATGTATGCCACCACGCCCGGCTAATTTTTGTATTTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCACGTGATCCACCTCCCTCAGCCTCCCATAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCCTACATGACTCTTTCCTGTACCTCCTTTACACCTTTGCTGAAATTCCCCTTTTCAGCAAGGCCTTCACGGCCCATTCTATTTAAAATCACAGACCACCTCCTCCCTAAATTCCCAGTCCTCCTTCCCTGCCTCCTTTTCTTCTGAAACACTTATCAACTAGTGTATCAAATATTTTATGTTTATTTTTCTTTTCATCATCTCCCTCCCCTAGAAGCTAAGCATCACGAGGGCAGGGGTTTTATTTTGCTCAGTGCTGTAGCCCAGAGCTTGGCTCACAGCAGGAGCTCAGTGAGGATCTGTGGGATGAGCTGCATCTCTCCTGCCCGGTGCCTGGACACAGGGGGATGTGTGGACGGCTTGGGCAGACCAGCCTCCGGCCTCTGGTGCAGGCCCAGCTCAGGGCTTGGTATCGTGAGCCAGAGCCTTTGAGGTAACTGGCAGGTCCTAGGGGTCCAGCAGCAGCCCCAGTCCTCCCTGTCTGATGTTGAGGCCATCCCCAGGCATTCGGCAAGAACTAGGGAGCCCACACCTGGGACAGTTCCAGATTCTTTCTGCTTCCACCTCTACCTGTGGTGGCTCTTCCCTTCTCTCTTCTCTTGCACAGGAGGAAGGAGCAGCTGCCATCTCATTAGTCTTGATCACCCTTGCCTGCCCGATATCCCCTCCGTGTCTCCAGCATTCAAACCTATCTGATATCTGACCACAGAGTGGAGAGTTTGTTAAAAATGCAGATTCCACCCCCAGGCTTTCTGACTAACTGGTCAGGGATGCCCAGAACCTGTGTTCTTCACAAGCTCCTGGAGAATGGCTGCTGTGCAGCCACATCTGGAAGCTGCTGGTTTAAAGTTGTTGGAGCTGGCCTTCAGAATAGGGCTCTGGGTCAGGAGACCTGGGCTGAAGCTGCAGCTCCGTCAGCAGCCTGCTGTGTAACCCTGAGCTGGTTGTTTTGCCTACCTCACTGCCTCCCTGATGGGCATGGGAGGAGTACTTGCCTCCCAGACTGTGAGTCTGTGGGTCTGAGTCTGGGAAATGACTGTTTCCCTTGAACCTGGAGTGTATGTCTCTCCCCACCTCAGGGTCCTACTTCAGGGAGCCTGGATTGTCTTCCTCCTGGGGGTCCTGCCTGGGCCTTTTTTGTAGCCTCCTCCTCTCAACTCACCTTCCTTCCCGGCTCCTTCTGCTTCTCAG
Seq C2 exon
GTAAGACTCGGACCAAGGACAAGTACCGCGTGGTCTACACCGACCACCAACGCCTGGAGCTGGAGAAGGAGTTTCATTACAGCCGTTACATCACAATCCGGCGGAAATCAGAGCTGGCTGCCAATCTGGGGCTCACTGAACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113722:ENST00000231656:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=WD(100=90.6)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains