RnoINT0033696 @ rn6
Intron Retention
Gene
ENSRNOG00000060334 | Cdx1
Description
caudal type homeo box 1 [Source:RGD Symbol;Acc:621233]
Coordinates
chr18:56339040-56355341:-
Coord C1 exon
chr18:56355012-56355341
Coord A exon
chr18:56339186-56355011
Coord C2 exon
chr18:56339040-56339185
Length
15826 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
ATTGCCCTTCTGCTCCTCAGGTA
3' ss Score
9.17
Exon sequences
Seq C1 exon
CCCCGCAGTACCCCGACTTCGCGGGTAACACGCACGTGGAGCCGGCACCCGCGCCCCCTCCGACATGGACTGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCAGCTGCATATGGTCCGGGCCCCGCGGTCCCCGCCGCCAGCCCGGCCCCGCTGGCCTTCGGGCCCCCTCCGGACTTTAGCCCAGTGCCCGCGCCTCCCGGTCCTGGTCCTGGCATCCTGGCGCAGTCCCTCGGGGGTCCGGGAGCACCGTCCTCGCCAGGAGTGCAAAGGCGGACGCCCTACGAATGGATGCGGCGCAACGTGGCAGCTGCAGGCGGCGGTGGCAGCG
Seq A exon
GTAAGGACCCTTCTCTCCTGTCTGAGTCTCCAAACCTGGCAGGTGCCCGGCGAGGCCCAGGTCTCCCTCTTTGACCTTTGCCCTGGCCCTGATTGACTTCTCAAGTGTGTGGCCCACGACCACTCTTGCCCTGGAGAGTCATATTGTTTCGCCCTTCCTTATCTCTGGGCTTTGAGAGTTTTGAGTAACCCAACTGAATCCTTGTGTAGAGCTGAGGAAACTCTACAAAGAGAAGACATTGGGTCTGTGTAAGTGGTAAGGCCACAATGAGAAGGCCAGACGCCAAGTAGCAGTACTGGCGCTGCCGATCTTCCATAGCTTCTTCCAGTCCTAACCCTGCCACACACACACACCCAAGCACCTAACTGCTGTGGGAATGCGGATCTTCTTCCCCTCAGGACCAACTGGTTTCCTATCCTACAGTGAAGAGATAGGATCCTTTCCTTTGGTTGACGGAAGTTCCCATTGGTTGCATAGGAACAGGGGTCCCTACCTAGCCTCCCCAGGACTCTCCCTGAACTCTTGACCCCGGGGGAGGGGCAGTAGGAGCAGTTGGGAAGGTGGCTGCTGTTTGGTTCCTCAGCCTGTGAAGCGCCTGCAGGCCCTTCTGATCCACCCTCTTCAAAGGCAGGGGAGGGGGCTGGACAAAGGCGCAGCTTAATGAGGGACAGCCGGACCTTTATGGGAAACCCCCCCTCCCCTTTGTCATGTAACTGCCTTTGCTTTAGCTCAGTAGTGACTCCTGTTGGCCGGAAAGTGAACAGGATACTTCATTGTCCAGATTGTGTTTGGCCAGTCCTGACAAAGGCCACCTGGCCTTGAGGGCGGGAAGCTGGCCTGCCTACTCTTTGATGTCCGACCCCTGCTTCCCTTCTCCCAGCTGGGGGCAGGCCTGGGACTTCCTCCACCTCCTCTCCCTTCCCTCCATTTCTCCCACACACCCATCTACTCCCCTGGGTAGCTGCCAGGAGGGTTTGATCAGTAGCTTCAGGCCTTGGTTGTAGTCACACCCTTCCTTAGAAGTGCAAGGGACACAGAAGCTCTTGTCTGTCTCCGGGGATATTTGAGGGGCAAGGCTGTTCTCTTCTGTGCCTTGAGTAATAGCTAGTAATATGGAAGTCTTATACAACATATTGCTGTCTCCCCTGCCTCCCGCCCCCCAATTTGGAAGGTGAGCAAACCATAGTACCAAGATGGTAAATCCTGGCCCAAGGCCACAGCTAGGAACTGGTGGGCCACACTAAACACCATACCAGTTCTAATCCTCTGTGCAAGCGATTCCTGGGTCTCTGTTTTACAGTCAGTGAAAGAAGGGACGGGGGAGGTTACATGTTGATTTATACTCTGCTTCAAGCTATAGAAAAGAGTCTTGAAAAAAAGCTGATAGAGATGAAAATCTTTTGGAAGACTGTGTGTGTGTGTGTGTGTATCTGTGTGTGCGTGTGTGTATGCATGAATATCTCCTATCCTGTCATCCAATGTAAAGCTCTCCCCTGGCATTCATGAATCAGGCTTCAGAGCACCACCTACTCACTACAACCACTGCCCCCAGACACACACACACACACACCACACACACACACACCACACACACACACAGCACACACACACACATGCATACACACAAACACAACACACACACAACACACACACACTCACACATACCACACACCAACATGCACACACACATACACACACTCAACCATACACACACATACACACACACTCACACACCACACATGCATACACAAGCACAGGCACATGTCGCACCACACTCGCACATATGCACATGTACACACACACAGGGTCACACACACTCGCATGTGCATGTACACACATGCAGACACACATGTGCATACACATGCACACGCACACACATCCATGGCCTGCTACCTGCGGTCGGTCCTATCTCTGATTATAAGTCTCCCTTGTCATTCAATGTTGTCGCAGGCTCTCAGGTGCACCACTACTCATAACAACCCTGCCCCAGCACGTCTAGGAAGGAAGGCACCTTTCTAATCTTCCATTAGTGGCTTCCTGTTGGTCAGGTGGCTCAGAAGGATGAGGAGGTTCCCCTCAGGGAGAGCACTGGAGGAAGATCATTGGTGTGAAGCTGTATGAACAGGAGGGAGTAGGCCAGTGGAGTAGTTGTCAAAGGAATGGAGAGTCTGATAACTTGGGGTGACATGAGGAAACCTCTTTTACCTTTGGGCATGACCCTGCAAACCCAGCTGCACTCCTGGTCACCTGTCTCTTAGAACACTGTTTTCTGCATGCAGACGGGGCCACCAATGTCCAAAGGCAAAACGGTTTTTCTCTAGGAGTCGAGGCCAGGACTACAGGTTTGGATTTTAGGAAGGGGTTTTTCAGGAGCCAGATTAGACACATTTGACAAAAGACGCAGGAGTCTGAGCCTTCTGGCCTGCTCAAACCATGTGACTCTCACTAAGGCTCCTCAAGTAGAGCAGAATGAGAGCTGAGGGAAGGGTATAGACTCCCCAAGGGAGAAGCCCTTCACCCTCTTTCTTTGGCTCAGTTTCTCCTGGGCACTGAAGGTACAGGCTCCCAGAGGTGACTCTTATGCTGTGGTCTGGGAGAGCTGAGGGAAATTCACTTGCCTGCCTCACCCTCCAGTTCACGGTGACTCTGTCCATAAGGTGTTCAGCCTGCTACCTTCCTTCTTTTGAGCCCCAGAGAGCCTAGAATATCTGCACTGGACAGTTGAAGGGCAGATGTGGGGTCCAGAGGTTATAAGATCCAGTGCAGATGAATCAGCTTCAAGTTTTTGTGTGGTTTCCGATACCACTGAGGGTGGACAGCACACTCCCTCCTCAGGCCCGAGGCTCTACAGCACCAATGCTGCTCCCCACCCACCGCTGGACCCCACCCCAGGCCACTCCCTTTGGCCTCTATGCTCCAGGACCCAGCCCTCTTTGAACTCCTCAGGCCAGCCAAGTCCTGCTTCAGGCCTTGTGTACACATTTGGTTGTTGTAGCTGTTTCTCTTCCCTCTGACTCTCTGCATGCTTGGCTCCTTCTCGTTTTCCATTCATGGCTGAAGGAGGCCCTCTGTGACTCCCAAGTCACACTCTATCTCCTGTCCTCTGCTGGGGGGCCTTTGAGAACCCTGCAAATTTCCGACGTTCTCGCCCTCTTACGTTGTATGTAATGTTATCTGCTCCCCAAAAGGTCTGGGGCTATGTCTGTCTGACCTGGGAATGGTTGGCACCAGCTCCATGCCTGGCATCAAGCGTGTGCTCAGTTAGATGAGAGAACCAGGAAGGTGAAAGGAGAGGAGACATCCCTGAAGGGGAGGGGAGGGGAGGGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGATAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGGATGAGAGCTCAGCTTCCACAAGTTTCTAGAGTCTGTCTCTGGGGTCTGGACTAAGGACTGTCCAGACAGCATTTCAGGATGGTAGTCAAAGACTGGATGCCTTCCCCACACTTGGTCAGTGCTCCTGACTCGAAGCCGTTGGAACAGTCAAGGCCAGGCTCTGATTTGATTTGGTTTTATTCTAGGAAAGGGTGCTGGACATCTAAGTGGGGAGGCAGTGAGCCCCAGGTAGGCTGCAATCCAGGAACACAGCATGACCTGGTTCTGAGGGAGCCATGTCACTTCTGAACCCAGTGGCATCTACAGCCCAATTTAGTACTGAAGATATTCTCCCAAAGGTTTGCTTAGAAGCCCAGGGACTTATTGGAAACGATTAGAAGTTGAGGCTTGGGAGTCTTAGCTCTGGGATTCCAATTCTTTTAGATGCCACATAGCCAGAGGTTTGTTAACCTGTATCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTTTTTCTTCTTCTCCTCCTCTTCCTCCTTCTTCATGGTTTTTCAAGACAAGGATTTCTCTGTGTGGCCCTGGCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGACTAAAACCCAGAGGTGCCCTGTCTCTGCCTCCTTAGTGCTGGGATTAAGTCATGCACCACCACAGTCTAGCATTCTGGTTACTGTTGTTGTTTTAAAGGATTTTATTTATTAGTTTGGGAAGCTGTCTGCCACAGCTTGTGTGGAGTTCTGAGGACAAGTGCATAGAGTCGGCTCTCTCCTTCCACCTTAGCAGAGGGTCCAGGAATCAAGCTCAGGTTGTCAGGCTTGAGTAGAAAACGCTTCTACCCACGGAGCCTTTTCACTGGCCCCCAACTCGGATAATTTCTCGCAGCCATGGTGTTGTTAAAACACAGCCAGCCCTGGGCAGGTAGCCTGTGCTCAGTGATCACTCCTGGCAGGTGTGAACAGGCCTAAGCTTCACACTTTCTGAATCTCATCCTGGGACCTTGATCTGCCCTACCCTCTCTTCCCTCTACAGCTTCTCCAGCAGTTCAAATGCTGCTCCTTCTCCACGGCTGCCTTCTTCAGGAAACCCTCCCTGACTCACCCCACTCCAAGTGAAGGATAATCATAGCCTACTGATGGCCCCTTGTTTTAAAAATCTTTATTATATCTACTTCTATCAACTTGCTTATTCCTGCCAATTGCCATCTGTAATCCTATCAAAAGCCAGTCCTAATCAACCCTCTCCAGGTCTGTTTTGCACATAGTAAGAGTTCATCATGTAAGCACTCTGCAAAGATCTCCTTTGGGGCCTACTTAGGCCTCATAACTACCCTGAGAGATGAAAGGCTCTATCACTGGACACATTTTACAGATAAAATCGAAGAGGCCTAGAGAGGCCACGTGGCCTGCCCAAGCTCACACAGCATAGGGTATGACAACATACAGTTCCAGCCAGGGTCCACAGCCTGCCAAGGGTTTGTCAAACAAAGCAACAGTCTCAAGGACCCAACCCAAGATCTCTCCTTGACTGCCTGCTTTCCAGCCAGTGCCCACCCAGATGAGGGGAAAAAGAAAAAGAAAACGAGGCCAGCAGGGAGGAGCTGAATGAGGTGGGAGGGAGAAAGGGGGAAGAAAGAAGGAGAGGGGGAAGTAGGCCTGGTGGGCTGACTCTTTAAAGCAGGTTTTCCCTGCAGCAGAAGCTGCACCTGACACCTCAGCTCTCAGATGTAGCTGGGAATGACCTAGTTAGAAAGTGGCTGGAGATTTTTTTTTTTTGTTGTTGTGGAACGTGTGTCCCTTTTCCCCAGCGGATCTTGTGCTTAGAGCCTCAGGAGCCGTTCTCACATCCAGACAGTTTTGCTAGCAGCAGGGGCCAGCTTTTGGGAAGGAAGTCCTCTTCTTCAACAGGCCTCTGGGGACAGGCCTGGAGCTCCTGGGATTCACAAGCAGCCATAACATCTGGAGTCGGGGTCATTGCCATGTGTCGCTACCCTTTCCCTGTGTCTCCCCTCAGCCCTCATCTTGGCAGGAGCAGGGAGGAGAAGCCTGAGCTTGCCTCTTTGTGTTTGCCACCCTCAGGCCTGCCTGGGCTCTGAAATCAAGCCCAGACTCCCCTCAGCCAGAGATTCTGTTAGTTCTCTAGCCACAGCTTGTGCCCCCCACCCTCCACCCCAGTACATCCTTCCTTCCCTTATCCATTCTTCCAGGTAGGCAGGTAATATTATTCTCTTTTGTGCTGAAGGTTCCGTTGGGTGATGGGAGGTATGGTTGAGCAAAGGTGGGATCTTTACCTGCCCTCAGAGAACTGGAATTCAGCTCCTCCCTCAGCTCCTCCATCCAAAGGTTTTTGCAGAAGCCATTTTCTCTTTCTGGAGTATTATTCCCATATAGGATATAGAAGCTGCTTCCCTCTCAACCTTCAGCTCTTGGCCTATAAGCCACTCCCTCCAAGAGACTTCCCCAAGGCCTAGAAGGTCCACCCTCTAACAACTTGGCCCAGCCTCAGGTCTTTATCCGTGGTCCTCCGCGTTCCCGATCACAGTTGGTAGTTGTTTGATTGTCACAGGAGCACAGACCAGACTGGTGCTAAGCACCCAGGACACTCTGTGCTCAGCCACTCTTCCAAAGCAGTATTCCTGACCCTAGAATGGGACGCTTTATGACTGGCTTTGAGGTCATGAGGAAGCAGGACACCAGGCAGGAAGGGCCGTTTTGGAGGCTGAGCCCTCAGCAGAAGGGGCAGAGTTGTACTCTGGACTGAGGGTCCTTGCAGAATAACTTTGGAAGAATGAGAACAGTGGCAGGAGCTGCAGCTAGTGTGACCTCAGTGTAGTGAGGCGAGCTAGGTAGCTTGGGCTCCTGGTCCCCGGTGGGCAGTGAACTGGCAGTGGTGTCTCATAGAGCTTCCTGTCACCGGGAAAGCATATCAGATCTGAACCATCTAGCAGCCAGCTGCCAGGACAGCAGTTGAGCCCTTGAAATCTGGTCACTGCCACAAAGAAAACAATAAAAACGAAACCAGAAGGGTTCTAGTGGCTTATGTGGGGATGTACCAGCAGCGCATGGCCAACCTAGGTGAAGTTTTCAGGGACATCTGACTCCAAACTTCTAAGATTAGTCTATGATTTGATGAGTATGAATGTTTTCCCATGCGTGTCCCTAGTGCCTGCGGAGGTGAGAAGAGGGCATCACATTCCCCTGGAACTAGACTTACAGATGGCTGTGAGCCTCCATGTGGGTGCAGGGAGCCCAGCCCTCTGGAAGAGCAGCCAATGCTCTCAACCTCTGAGCCATCTCTCCAGCCCAAGACTCTAAAATTCCTTCTTTTTGCTGCCTGAAGCCAGGTTGGGTTGTGGGCCTCAAGGAAAATATGGGGGTCAAGATGCACAGGTTACTTGAGAGCTGCCGGGTGCAACCAGGATGGATGACTCTTGAGTGGGAAGAGGAGGTGGTTTAAGGGGTTACCGATTCCCTCTTGGGGCTTCCTCAGACTTGGTTTGCTTAACCCAATCCTGCCAGCCTCATCCTTCCTCCCGGACTCGTGTGAGCAGCCATGACAGAATAGGCTGTAGTTTCCCTTCAGCCAACATGAGGGTGAACGGTGGGCTTAGGAAGCCCATGGCTCCAGAATGGCTTCTAGTGTCCTGAGGACAGGCAGGGCCGGAGCTGCTGCAGCAGAGACCCTGCTACAGGTGACACAGATGGGAGAAAAGGCTCGAATTGAGATCGCACAGCAACTGATGGCATAGTCAAATCTCCTCACTCCAGGGCGTTCTTTGAAATGTCTTTCCCATCAGGCAACATTCCTCCTGTTCCTGAGGGAGCGAGTGCTCCAGCATCTACTTCTACAAATAGCTCAGTTCCGCTTTTTGGGGGGGCGGTGAGGGTGGGGGCGGTGTCTGTAGCCCTTTGCCCTTTACAACTGTTTTTCACATCTGTGTGCTGGACAGGGAGGTGACCCACGAAAGCTCAAACACTTCTCTGCTCCTTCCACTTCCCAGCTCTTAGTGCTAGGTCTGGACCCTTAGTGAGCACCCCAGCCTTCGAGGATCTTGAATGGCAGAGTGCTAATACCACGGGGGTGCTCATCACCTGTCACTTTTTGGTAGCCCTCTTGTGTGAATCTGGATGACACCCCAGGGGTCTTTAAAGTTATTTGCGTGCTCAGCAAACTTGGAGTTCTTTCTTCTCATCTTTTCTGTACAAAAGATGGCCACTCTCTCTGTTCTTGTCCATCTCTGATGTTCTTCCTCGGTCTGCACAAGGCCTGGAAAAGGCATTGGCCAATGTGCTCAAGGGGTGGCAAGGAAAGTGATCCTCCAATACCTTTGAACCCCTCTATCTTTCTTTCCTTCTCTTTGTTCTTTGGCTCTGCAGCTGTCCTCATCCCATGACCCAGTGACCTTTCTAAATCTGTTCTCTCATCTCCATCTTGAAGCACCATCCAATGGCTTCCTTTCCCACCTCCCTAACCATCCCCCAAGCAGGCACCACAGACATAGGTGGGCAGGCCATTGCCCCCTGCTCTACAAGACTGGAGGGTGTGTGGATATGCCCTCCCTATGCGTGTACCTGGGTAGTGGGTGAGTAGTGAGGCAGACTCAGAATTGCATAGAACTTGACCGTCGAGAGCCTGTGCTCTGAGGTTGTAGTTCAATGGAAGAGTGCATAGGTAGCATACATGAAGCTCCGGGTTCCACACCTTGATGCTGACACCCACCCCTCATCAGGAAAGACTGAGACCCACAACTGAGGCACTTGTTAAGAACACTCCAGCTGGAGCTTGCTAAAGATGAGAGGGCAGAGGTGTAGCTGAGAGGAAGAGTGGGGCTTGGTCCTCAGTACCATTACCCCCCAAAATGGTAGAACTTAGCATTAGCAAACTCCCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTACATGCCTGGTGGGAGTGTCATCTTAATGTACAGCCACAGGAGGTGGCCCACCCAGTGAGAGGTCACAGAGGGTCTGGGGTTGAGGCCCACAGCCTGATAGTCAAGAGTTAGTTAACACTTGGAGCAACAAATCCAGGAGTGTTGACCTAGAGACCATTTGGTTTTCTGGGAGTCAGTCTGTCTTGGAGCAGAGGCCAGGCTCTCCTTGTCTGCCCGGGGCTGGATAAGGTCCACAGTACAGGCTGCAGCAACACTATCCTGTCTTCCAGCTGGGCAGGCCTGTTGTCTAGGCTCTCAGACTGGGAGATCAGCCTTAGAATTCTTTCGGCAGTAATAACAAACACGATCTAAAAATCAACAAACACTGGGAGCCTCCTGCTTCCAAGTTGGAAGGAACCTTACAAATGCAGCATCCCAGTAGGACACAGCCCCCATTTCCTGGCAATCGTACAGGGGTCACCCCATCACCATCAGGAAAGAATGAACCCTATCTCCCTCTCTGTGTACCTGCTGTATGCCAGGTATTGCACAGGGAGCCCTCCTCATCCAAGGTACAGCCCTGTACATCCCAAGGCTGGAGAGGATTGGGGAAAACCATTCTCTCTGTGATGGGTTCTCGTGAACAAATAGAGCTAGCTTTTAAAACATGTCTACTTACGTTTGTTTGGGCCTTGAGGGTCCCAGGGATGGAATTCAGGACATCAGGCTTGGCAGTAAACAACTTTCCTGAACCGTCTCCACATCCCTAGACCGGGAGTTAAATCCCATTGCTTTTGTTTGCTTGTATGTTTTATGTCAAAAACTGGATACATAGCTGGCGTGGTGGCACAGGCCTTTAACCCCAGCACCGGGGAGACAGAGGCAGGTGAATCTCTTGTGAGTTTGAGGTCAGCCTGGTCTACAAAGCAAGTTCCAGGACAGCCAGGGCTGTTACATGAAGAAACGCTGTCTCAAACAACAACAAAACAAGAAACCTAAGCAAACAAACCAAACAAAAAGCCAAGGTGTTGAGGCACACACACAAGTGTTTGGCCCGTGGCCACCATGATTGTCCTTAATGGCTATCTTCACATTACAGACTCAGAAAATGGGGCCCAGAGATGGGCCACCCTGGCACGGACATCCATAGAGGAGTGCTTGTTCAAACGAGCACATACCAGAGACACTTGGAGAGTCGGCCAAGTATCAAACCCCAGGAGCCAGTGTCAGCTCTACTCACTCCAAATCTGGGGGCCAGGACTCTCAGGACAGCTCACTAGGAGGACTGAGGCTAAAGGGCAGGCACTGAGAGCTCTGCTGGTGGCTTCTCTAGACCTCAAACTGAACATGCTTTAGACATGTGGAGATGCATTCACGCCTCTCAAAGCAGCCTGTCCTATGGGGATGAGACCTTCTGCCTATGACAACCAGAGCAGAGGGTAAGCCTTCCGTTTAGGTGAGTGAGTTAAGGCTCTGGCACTGTGCTCAGTCCTGAAGGTCTGCACCCACTCCCCTTACCAATTCTCACTGGCATCTTGCCTACGAGTTACTCATTCTGAGCCTGGGAGTGGCCGGCCCCTCATCAGACACCTGTTACAGGAGCCTGGACTTCCCCCCAGTGTCCCCGGAACCTGTAAATCATTCACCCTGGCCTCTTCCCTGCTCTGTCCCTTTCATGTGCCACCTTGCCCTTCCTCTCTGGGTTCCAGAGGGGACTCAGATGCTCACAAATGGTTATCAGGGAGGATACAGGCTTGAGCCCTGTCCAGAGCTTCAGAACTCAGGGCTCCTGACTGTCACTGCAAAGAGTTTCCAAGGATGAGGAGGGGCTCACAAGGCCCCACGTCTGGCTGAGGAACTGTTGGCAGCTGATGGCCACTGAGAAAAGGAGAGTCATTCTTCTTTGGTGTGGCCACTATAGGTTGCCCATGCCCCAGTAGGTGAACACACACCCACACACATGCAAACAGCACTAAGTGGACTCTGGGTTAGAGGAGAAGGAAGAGGAAGAAGAGAGGGAGGGGGCAGATGTAGGTGGGAAGGAGATCTTAGGGGAGCTGGAGGAGGGCACAGGGGTAGATATAATCAAAGTCTATTGTATTTATGTATGAAGTTTAAAAGGATAAGTAAAATCTCTTTACAAATGAGAGTTCAGAGCTGGGAATATAGCTTAGTAAATGGTATCTTAGCATGCACAAAGCCCTGGGTTCAATTCTCAGCATAAGCCGGTGTTGTAGTATACACCTGTAATCCTAGTACTGGGAGGTGAGACAAGAAGATCAGGAGCCTAAAACCATCCTCACTGTAGAGTGAGTCCAGGGCCAGCCTACAAAGTTAATTAAAGTGCAGGCTCGGTGGTGCACATCTGTCACCCTACCCACAAGAGGTCAAGGCAGGAAGTTTTCAAATTCAAGAATTGCCTGGGCTACAAAGTGAATTCAGGGTTTGCCTGGACAACTCCGTCTCAAAGTTTAAAAAGTATAAAAAGGCCCAGGGGATATTATCCTTGTGGTAGAATGCTTGTCTATCATGATCAGGCCCTGGAGTCAGTCTCAGTGAAACATACGTGCACATAGGCATGTGCATGTACAATCGCATGCACATTCACACGTACACACAGAACATATACAAATAATGCATTGGACATTTGCACAATGAACACTGAAACCCTCTAAAGTCCAACACCCCCTGCTTTCTGCCTTCACCTGCCTTCCCAGAGGAGGCAACTCCTGTTGTTGGCTTCTTGTATTGTATATATCTTCAGGAAAACAAAAACTAACCAAAAAATTATACACATCTACTTTTTTTTTTTTTGAGACAAGTTTTCCCTGTGTAGCCCTGTTTGTCCTGGAGCTCTTTCTGTAGACCAGGCTGGTCTCAAACTCAGAGGTCCACTTACCTGCCTCTGCCTCCAGAGTGCTGGGATTAACGGTGTGTTACCACTACTGCCCAGAATTATGACGTACTTTTGAAGCTTTTTTTTTTTAGATTTATTTATTTATTGTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGCGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTAGGAAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTGAAGCTTTTTTTAAAGATTTATTTATTTATTATATATAAGTACATTGTATCTTTCTTCAGACACACCAGAAGACAGCATCAGATCCTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGGGCTCACTTTTTAGGTTTTTTAAAAGATTGTGAATTTTCGTGTGTGTATATGAGCGTGTGTATGCTCATAAACAGATGTGTTCACCTGTACCTCGGCTTGTGGAGACCAGAAATTAACTCAGAGTATCTCTCTTTATTGCTCTCCAACTTGTTTTTTGAGGCAGGGTTTCTCACTGACCCACAGCTCAGCATTTCAGCTAGACTGGCCAGCCAGTGAGTCCTAGGGATTTACTTACCTCTACCCTACACTGGCAGAACTGGAACCACAGGCGAAGGAGCCACTGCGGCTGGCTTCATAGGATCTACACCCAGGTCCTCACGCTCTTGTGGCAAGCATTTCCTGAACAGAGCCATTTCCCCAGCGTGGGAGCAGGCTTCTCTCACGGCCTCCTGCATCTTGCTCCCTCCTACATACGTCTTAACTGTTGCTTAGTGCTCCTCTCCATTGGTCTTCTGTGTCGTAGCTCAGCTGCTCTCTACTCGTGGACCTTGTTTTTAGTCTTGTGCTAGTAGTAACATTCTCTGCTGTGGGCAGTTCTAGGTGAGGTTATGTCCTAGAAGTAGAGCTCGTGGCCAAAAGCTCTGTGCATGCAAAGCCGGACCACATAGTGGTTAGTCGGGTCCTGGGAGGGCTCTCCAGTTAGTGCTCACCCTCAAGGATAGATGTGAGTCCCTTGTTCCTGGGCCATATAGGGAATCAAATGTTTTGTTTGTTGCCAGACTGTTCTCTTAGAATCAATCTATATTCCCTTTTTTTTAATTGGATATATTTTTTTAATTTATATTTCAAATGTTATCCCTTTCCTGGTTTCCTATCCATAAGCCCCCTATCCCTCTCCCCCATAAGGGTGTTCCTCCCCCATCCAACCCCCGCTTACCACCCGCCCTCCCATCAATATTCTTTAAGCAGCTGGACTACATAGAAGTTTGCCAATAGGTTCCTATTCCTATCAACCCCTCTCTAAGCCTATGGACTAGGGTTCCACTGACCCTGGTGGGGACAGAGGTACTGAAATGCAGCCAACAGCCTGTATTGTCTAGTTACCATTCTCTCTGTTGTGGGAAAAGCCAAATGGAGATCAGGTTGCCCTACTCTCAGCACATGTCATCACCAGGCTCATGGCCTCAGTGAGAGCAGTTTTCTGTGTCCTGGCTCCCAGCTGTGAATGACCGTTGTGGGTCCCTTGTGCTTACCACCAGGAGTCGGGGTGACAAAGACAGACACAGAGACGGGGCAATGAAGATAGGTACTAAGGGAACAGTTGCTTTCATGACCGAACCTGGGCTCTCGCAAACAGAGCTCCATCTGCTGCCTCAATCCTCTTGGAGACAGCTGGGAGTCTTCCTGGCTTTTGAAAGTTCTAGCCCAAGCCCATCAACCACAGTCCAAACCAGGTTTTACAGTCTGCCCTTGCCATGGTCTGACCCTCCATTCCAGGGAATGGACATAGAGGTGTGGTCTGTTCTGTAAGCTTCTATTGCTACACTTAGGGTGCCCGGTAGCTCAGTGGTACTTAACTAGGGTGAGGTTGGAGTTGTGTTTTGGAGGTAGTCGAGAGAGCTCTAGACTAGAGGGTGACCTTGACTGCAGGGAGGTTGGAAGTGCTTGGCCTTTCAACATTATTTTGTCTTTATTTTTTTTTTCTGGAGCTAGGACCAAATCACCTTTTGACATGAAGTAAGAATTATAGAGTACATAGAATAAATTAAGTAGTCTGAAGATGTGTGGGACCACATTTATAGTTACCACAGAACACTTGTGATCCACAATTGGACATGCCTGGAAGAACTCACAGACCTCTTATTTAGAACTCCAGCAGCCACATGGCCACCCTAAAACATGGTCTTGTCATCTCTAAGATGGCAAGGGACTGAAATCCCAGGGCTCCTGGCCTAGCCAGTGATCCCAGTGGGCTATGGGTTCAGAGCCCAGCTAGGGTGTGGTGGTAGTAGCCTCAGGGAGAGCTGTTTCTGAAGCAAGATTGACTTTTCTAGGTCAAGGAGGAGCCGTGCTTGGAGCCAGCACCTCAGCAACCTCTCCCTCAGCCCCTCCTCTAACCAGGCCTGGCACGGAACTGCAGGCTGTCCTGAGCTGTCTCTGCTGTCAGGTGGTACTGTGAGCCTGGTGCATATGGAAATGGCCAGTGTGGTTCTGCTGCTCTGGCAGAAGCCCAGGGAGATGCCTAGGAACAGCTGCTGTCTCCCATTCCCCACAGAACCACTTGGCTGGAGAAAAGCCTAGGTCTTTCCTGCCAGGCTGTGTGGGATGGAGGTGGGCCCAATGCAGGTCTTTAGTGCAGGGGCATGGGTAGGGTGGGGGAGAGCCAAGGTACAGAGCAGGGAGGCCAAGGCCAAGCTGTTGGTGGGCGCTTGGCAGGAGGGGTTCCAGGGTTATGGCACGATCCGGTGTTCCCTAGTGTGTGAGCATGCCTGCTGTCAGCAAGCACCTAGTTTAGCCATGTGTTTAACTTCTTCCAGGGAAAGCTGGGGCTCACCCAGGCCCCATACCATGATCCTTGCCCCAGACAGCCTCCTAAGCTCAGTTCCAAAGACAACCCTGATGTTAATAACCTCAGATGGTCCTAAGTCCAGCTCCTGGCCCAAGCAGCACCATCTAAAAGCCAAGTCACCACCCTCTTGTCCTGAGACATGGCAGCCCCCTGTCCCCACTCTCCACACAGCTGCCGGAGAAACATGAAAGCCTGCAGCAGACACACGTCTCCTCTGCTCAGAGCCCTGCAACAGTTCTCCCATTACAGACAGAGGAAAAACTAAGGCCCTTCCCTTGACATCTGTCCCCACCCCCCTTCCTCTTTGTTCCCCTGTACCACCAGCTTCCTCCTCACTCATATTCCTACCTCAGGGCCTTTGCCCTCCATGTTCACTTCGCCAGATTCTATTTCTCTGGGAATCTGCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTTCCCCCCTTTCTTCCTCTCTTTCTCTCTCTCTCTCCTCTCTCTCTCCCTCTCCCTTCCCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTTACCCCCCCCTCTTCCTCTCTCTCCCTTTCCCTCTCTTTCTCTCTTTCTCTCTTTCTTTCACTCTCTTGCTCTCTCGCTCTCTCTCAGTTAGGCTTCAAACCACTGTGTTGGATTTTCGTTTTGTGAGTTTTTGAAGCTAGAGTTCCAGTATGTTACCTGTGCTGCCCTGGTTTTGAATTGTTAGTTTCAAGTGACCCAGCCAAGTAGCTAGGACAGTAGGTGCCTGCCACCTGACTCTGAAGTTCCCACTGCCAACTTTGTAGGCTCCCCATCTTCCTTCTTTTCCTCAAACTAATTGCCAGCGAACAAAGCAAATGCTTTCCCTTTTTATTTTCTTTTTGTCTGTCCTCTCCCCCTAGCATCCAAGCAAGGACTTTTCATTTTGTTCCCTGCCCACCACAGTGTGTAGCTTGAGACAGGAACTTGGTTTGTCCAGTGGAATGAGCTAAGTCACTGCACACGGAACATAGGGGGCGTATGGACAGCTCGGCTAGATCAGCCCTAGGGCTCCCGATGCAACCCTAGAGTAGGGCGTGGCATTTTGAGTGTTCCTTCTGGGCTCCTTGCAGACCCTAGCATCTACCAGCAGCTCTAGGCCTTTCAGTCTTACTTTGGGCTAGCATTCAGTAGAACTGGGAAGCCCCCAATCACAGGGTACTTCCAAATCCTGTTTTCCCTCACCATTGGATCTTTCTTGCACAGGAGGGAAGAGCGTCTGGGAATCCCCTTTATCCTTAGTCTACCCTCACCAGCCAGGTGTTCCCTCACCAGCCAGGTGTCCTCTAACTAACCAGGTGTCTCCTGGCCAGTCAGGTGTCCCCTTCGTGACTTATGCTCAGACTTATGGTCTGGGGACCCCTGAGTCAAAACCCATCTGGGAAGTTTGTTACCACACAGCTCTGAGGCCCTCCGAGTGAACAGTCAGGGAATCTCCTGAAGCCTCACTTTTCACAGCTGACATAGCTGGCTTCAGACCACAACCTTGTCATCAGCTTCCTGCCAGAGGTTTCCTGGTCCTCCTTGAGCATCCACTACACTTGCCTTCCCTCATTGCCCTTCTGCTCCTCAG
Seq C2 exon
GTAAGACTCGGACCAAGGACAAGTACCGCGTGGTCTATACAGACCACCAACGTCTAGAGCTGGAAAAGGAGTTTCACTACAGTCGGTACATCACCATTCGGCGCAAGTCAGAGCTGGCTGCTAACTTGGGTCTCACAGAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060334:ENSRNOT00000083379:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=PD(80.0=97.3)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=85.7),PF119313=DUF3449=PU(44.8=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]