HsaINT0033078 @ hg19
Intron Retention
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin-like elastase family, member 2B [Source:HGNC Symbol;Acc:29995]
Coordinates
chr1:15802596-15803040:+
Coord C1 exon
chr1:15802596-15802660
Coord A exon
chr1:15802661-15802951
Coord C2 exon
chr1:15802952-15803040
Length
291 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GACCCTTTCTCTTTTCACAGCCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
CTTACAGAACTCCCACGGACACACCATGATTAGGACCCTGCTGCTGTCCACTTTGGTGGCTGGAG
Seq A exon
GTAAGTCCTGTCACCCAGAGGCACTGGTTTCCCATCCCCTGGTGGGGCTGGAAATGGGATCTTCCTGTCCTCCCCTCTCGCCCCCACCCAACCCCTACTGCATTCAGACCTATAATCATAAGAAAACCGAAATGGAGTTTCAAAGAATTGGAGCAAACAGAAGGATTTTATGACCTCTTGGGATCCTTCTAGAACAAGGGTTTTCTATTTGGGGGTTCAGAATGCAGCATGTATAGTTTACATTGTGTGGGTCGCTGCTTCCTGGACTCAAGACCCTTTCTCTTTTCACAG
Seq C2 exon
CCCTCAGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGATGCTTGGAGGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704-CELA2B:NM_015849:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACTCCCACGGACACA
R:
CTGCCAGGGCCAGCTGTT
Band lengths:
152-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)