DreINT0062419 @ danRer10
Intron Retention
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25518412-25518702:-
Coord C1 exon
chr5:25518583-25518702
Coord A exon
chr5:25518501-25518582
Coord C2 exon
chr5:25518412-25518500
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
AATCTGAATTTCTCCTGCAGCCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
ATATTGTGTGGTCAATGTGACATCACAGATAGAGAGGGTTTAAAAAGCAGTTGATGCCACTGTTGCGGACCTGAGTCAACATGTTCGCCCTCATCCTAGCATCAGTGCTCATCGCCAGCG
Seq A exon
GTAAGACTTTTGCACACCAGAACTGCTTAGAGTTATTGTTCTATCATGAGTTCAAAAATAGTAATCTGAATTTCTCCTGCAG
Seq C2 exon
CCTTTGGGTGTGGAAAACCACCCATTGAGCCTCTCATGTCTCGTGTGGTCAATGGAGAGGAAGCAAGACCTCACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276:ENSDART00000009028:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCACAGATAGAGAGGGT
R:
CAGCTGTGAGGTCTTGCTTCC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]