MmuINT0043660 @ mm9
Intron Retention
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141401097-141402274:-
Coord C1 exon
chr4:141402144-141402274
Coord A exon
chr4:141401188-141402143
Coord C2 exon
chr4:141401097-141401187
Length
956 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
GCACCTCCCTCTCTCCCCAGCCT
3' ss Score
9.58
Exon sequences
Seq C1 exon
CTCAGCATTGGCCCCTGTGGCCTCACCTCCTGTCTCGGATGCCTATAAATGCCCTGCCTGGTCACACCAGCCAGTCCTCAACACCTGAACCATGTTGGGAATTACAGTCCTCGCTGCCATCCTGGCCTGCG
Seq A exon
GTAAGCTTGGGAGTGGGGACCAGCTGCAGCCAGCTGGTTGTAAGATCAAGCTGGCCTTGGGGGCGTCCTCTGCTCCCCCAAAAGGCACTTTTGGGGTCCTGTGTGGATTCACCCACTGAGCGAGCATCTGTGTGTTGGTTGAGCCTCTTCCAGATTGGTAGGTCCTGGAGAAGGGATGGAGAGCTTCCTCCAGAGTTTGAGGTTTAGTCAGGTGACCCTGAACAAAGCCCACAGTAGGCACTTCACTCTGGGTTCACTCCAGGGAGCCCCAGTCCCACAGAGTTCTTTGCTCTCCCGTTTATTGGTGACATTCTCCCAGATCACAAACTGAGGTTGTGACCGGTGTTTGGTTTGGTTTTGACAAGTGAAAGCTCTTGACTAAGAATCCTAAGGGCTCTCTAGACACAAGAGCAAGCTAGACCCTACATGTACTGGGTCTGTCTCTGTCTCCATTCAACAGCGGGAACTCGGAGGTCCAGTGGAGCTCAGTATCCTGCCAGAAGACCACATACTGCCTAACAGCCAGAATGCCGGCTCCATCGCCTCACCTCAGAGCAGACACTCTTAACTCATCCACACAATGTCCGAGACAGAGACATGATAGTGTGGGACTCTGAGTGGTCCATGTTGAGTGGCCCTCCATCACACACTGCACTGTGACCTACAGAAGATAGCCTTAGTCCCTCAAGAGCACCAGTCACTGCCTGTTGCTCCCACTTCTCCTTCTGTGTGGTTCTTTAAATGTGTCAAGTGGCTTAGTTCTCGGGAGACTCCCTGATTGAGGTCATTCTTCCTGCATCACACACACACACACACACACACACACACACACACACACACACACATGTGGACTCTCCCCAGTCACAAAGTAGAATATGAACCACCAAACAGGAGCTTTCCCATCTCCCCCTACCCAGAGGGCCAGCCTGCTCACCTGCACCTCCCTCTCTCCCCAG
Seq C2 exon
CCTCCAGCTGTGGGGACCCCACCTTCCCACCCAACCTGTCAGCCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAAAGCTGGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-Ctrc:NM_001033875:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(2.1=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCATTGGCCCCTGTG
R:
CTGCCAAGGCCAGCTTTG
Band lengths:
222-1178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: