RnoINT0043255 @ rn6
Intron Retention
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160402220-160403373:-
Coord C1 exon
chr5:160403322-160403373
Coord A exon
chr5:160402312-160403321
Coord C2 exon
chr5:160402220-160402311
Length
1010 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
GCACTCCCCTGTCTCCCCAGCCT
3' ss Score
7.96
Exon sequences
Seq C1 exon
AACACCTGAACCATGTTGGGAATTACGGTCCTCGCTGCCATCCTGGCCTGCG
Seq A exon
GTAAGCGTGGGAGTGGGGACCAGCTGCATCCAGCTGGCTGTAAGATCAAGCTGGCCTTGGGGGTGTCCTCTATTCCCCCAAAAAGGCACTTTTGGGGTCCTATGTGGGTTCGCCCACTGAGCATCTGTGTGTCGGCTAAACCTCTTCCAGATTAGTAGGCTCTGGAGAACGGATGGAGAGCTCCCTCCAGGCTGTGAGGATCAGACAGGAGACCCTGAGCAAGGGCCACCATAGGTGCTTCATTCTGGGTTCACTCCAGGGAACCAGTGGGCCTGTGTTTCCCCATCTGTGTCCCCCCCCACCCCAACCCACATCCCCACCCCTGATGGCTCTTGGCTCTCCCATTTTGGTGACATTCTCCCAGATCGAAATGGAGGGTGCGACCCGGTTTGGTTTGGTTTGGTTTGGTTTGGACAAGTAAAAGCTCTTGATCAGGAATCCTAAGGACTCTCTAGATGCAGGAGCAAACTGGACACTGCATGTACTGGGTCTGCCCCTATCTCCATTCAGCGGTGGAGACTCGGAGGTCCAGTGATGCTCAGTACCCTGCCAGAGGACCACATGCTGCCTAACGCCAGAATGCTGGCTCCATCAGCCTCACCTCAGAACACGCTCTCGTAACCAATCCACACAATGTCTGAGACATGACAGGGTGGGACTCTGTGTGGTCCACACTGAGTATCCTTCCATCACACATTACACTGTGACCCACAGAAGATATCCTTTGTCATGAGCGCCAGTGGCTGCCTGTTCCTCTCACTTCTCCTTCTGTGATTCTTTAAATGTATCGAGTGGCTTCGTTCTCAGGAGACTCCCAGGTTAAGGTCATTCTTCCCACATCACACACACACACACACACACACACACACACAAAAGGGAAACTGAGGCCCACAGAGCCAAGTGGACTCTCCCAAGTCACCAAGTAGAATATAAACTTGCATACCCGAGTTTTCCCATCTCCCCCTTCTCAAAAGGCCAGCCTGCTTACTTGCACTCCCCTGTCTCCCCAG
Seq C2 exon
CCTCTTGCTGCGGGAACCCCGCCTTCCCACCTAACCTGTCAACCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAACAGCTGGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745:ENSRNOT00000018393:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=45.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]