DreINT0062415 @ danRer10
Intron Retention
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21339515-21340400:-
Coord C1 exon
chr8:21340307-21340400
Coord A exon
chr8:21339604-21340306
Coord C2 exon
chr8:21339515-21339603
Length
703 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGTGTTTTGTTTTACCTCAGCGT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GCACTGGCCAGTATATAAACCCCAGCAGAACAGCCAAACACTGAAGATACAAGGATGATGAAGTTTGTGGTCTTGGCTGTTCTGGTTGTCGGAG
Seq A exon
GTAAGACGACTTAATATTCTTTCTTTTAAGGTGTAATCCCAAAAAAGAAGCATTGTTGTTAATTAATAAAGTGGTTCTCAAATACAGTTAAAGTCAGAATTATTAAACCCCCTGAATTATCAGCCTCGCTGTTTATTTTTTTCCCTAATTTCTGTTTAGTGGAGAGATTTTTTCAACACATTTCTAAACATAACAGTTTTAATAACTCATTTCTAATAACTTATTTATTTTAAACAATATTTGACTAGATATTTTTCAAGACACTTCTATTTAGCTTAAAGTGACATTTAAAGGCTTAACTTGGATAATTAGGTTAACTTAGCAGGTAAGGGTAATTAGGCAAGTTATTGTATAATGATGGTTTGTTCTGTAAACTATCAAAAAAATAGCTTAATAAGGGGTAATAATATTGACCTTAAAATGTTTTTTAAACTGCTTTTATTCTAGCCGAAATAGAACTAATAAGACTTTCTTCAGAAGAAAAAATGTTATCAGACATACTGTGAAATTTTTCTTACTCTGTTAAACATAATTTGGGAAATATTTAAAAAAAGAAAAAAAATTCAAAGGAGGTCTAATAATTCAGATTTTAACTGTATATTATATATATAATGTATATTGTAAGAAAAAATATAATAAAAGAAAAAGCCTTATAATATTTATTGCTATTAAAAGAGGCATGATGTGTTTTGTTTTACCTCAG
Seq C2 exon
CGTACAGTTGTGGGCTTCCCACTTTCCCTCCTATTGTGACGAGGGTTGTGGGAGGTGTGGATGTGCGTCCTAACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765:ENSDART00000079293:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCCAGTATATAAACCCC
R:
TGCCAGGGCCAGCTGTTA
Band lengths:
182-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]