HsaINT0043008 @ hg19
Intron Retention
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15764938-15766887:+
Coord C1 exon
chr1:15764938-15765000
Coord A exon
chr1:15765001-15766795
Coord C2 exon
chr1:15766796-15766887
Length
1795 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
CTGGCCTCCTGTCTCCCCAGCCT
3' ss Score
8.61
Exon sequences
Seq C1 exon
CAGCCAGTCCTGAGCACCTAACCATGTTGGGCATCACTGTCCTCGCTGCGCTCTTGGCCTGTG
Seq A exon
GTAAGCGGTGGGGTGGGGCTGCAGCTAGCAGGCTGTGAGCTCGGGCTGGCCTCCAGGGCAAGGACGGGATGGGGAGTGGGGGGGCCTCTGCTCTCCAGGTAAGACACTTTGGGGTCCCCTGTGGGTTCAGATGCTACCAACCAGCTGTGTGTCAGACAAGCCACAGCCTGCCTGCCAACTCTGTTTCCACATCTGCAAAACAGGGAAGATGATCTGACGTGTCCCCAGTTAGAAATGAGGTGTGGAAAGCACCACGCAAGGGGGAGGGACACGAGATGCCTCATCCTGGGTTCACCCCAGGGACCATCGGGGTCTGCCTTTCCCAGCATTCTCTCTCCCTTGAGGATTCTCCATTCCATCATTTTGGTGGCGTTTTCCCAGATTAGGAGCCCAGGGACTTAGCTTAAATGCCACTTCTTCTCTGCAGGACCTGGAAAAGTCATTTCACCTCTCTAAATCTCACTAACTTTTTTGGCAAAGGAGAGCACTTAATGAAGAGTCCTTCCAGCTAACAACAACAACAGTAATAATAGCAGCTCCTGTTTCCTGTGTGTTTACTATGTGCCAGACGCTATGCTAGGCCCCTTACATGTAGGAGCCAATTTAATCCTCAAAACAACCTTAAGAGGTAGGGTCTATTGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGATCAGGAGTTTGAGACCAGTCTGGCCAACAAGATGAAACCCCGTTTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGGGCACCTGTAATCCCAACTACTCAGAAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGAGGTTGCAGTGAGCCGAGATCGCGCCATCAAACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAGAAAGAAAAAGAGGTAGGGTCTTTTCATAGCCCCATTTTACAGATGAGGACATCGAGGTTCCGTGCGACTTAGTATCTTGCCTGACATCACATGGCAGGTTAGTGGAAGAGGCAGAATTTGAGTCCACGTCTGTCTCGCGGAACAGCACGTGTTCTTGACCGCTCCACACAGCTTCCCAGCTATAACAGTGGATTTACTGCTCTCTCACACACACACCATGATGCAGGGGCCTAAAAACAGACAGAAGAACACAGGTGTACCGGGCACTCGCACACATGCCAGCCAGTTTTGTTTTGTTTTGTTTTGTTTTTTGAGATGGAGTTTTGCTCTTATCACCCAGGATGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCATCTCCCAGGCTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTGGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATTTCTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTGTCAAACCCCTGATCTCAAGCGATCCACCCGCCTTGGCCACCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCCAAACGCTTTCTTTTTTATGTGTTGTCTAATTCAGTTCTCAGGGCAAACTCACCGCATTAGTGTGATTCTTCACATTTCACAGAAAGGGAAAACAAGGCCTAGAGACCTGGGTGGCTTACCCCCGTGACACAGTAAAATATCAACCCCGTGTCTGCCCAGCCCCAACTCTGTGCTTCTTCCACCTGCCCACCCTCCCACCCCTTTCCCCGTGGGCTACCAGCCCTATTCACTGGTTCTTCTGGCCTCCTGTCTCCCCAG
Seq C2 exon
CCTCCAGCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-CTRC:NM_007272:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=45.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)