BtaINT0045202 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53300514-53302109:-
Coord C1 exon
chr16:53302047-53302109
Coord A exon
chr16:53300606-53302046
Coord C2 exon
chr16:53300514-53300605
Length
1441 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCCTCTCCTGTCTCCCCCAGCCT
3' ss Score
9.96
Exon sequences
Seq C1 exon
ACCTGATTCTGAGCATTCACAACATGTTGGGCATCACGGTCTTCACCACGTTCCTGGCCTATG
Seq A exon
GTAAGCTGAGGCTCCATGACCAGCTGCAGCTATCAGGCTGTGAGCTCGGACAAGGACGGAGGCAAGGGCCCTCTGCTCTCCAGGGCTTTGGGAAAGGATCTTTGGGGTCCAGTGTGGGTCCAGTTACTACTGATCAGCTGTGTCAAATGAGCTACTTGCCCGCTGGGCAACTCTGCTTCTGTATCTGCGAAACAGGGCTGATGATCTGACCTCCCCAGGGTGAGGATGAGCGATGAGGTGCAGAAAGATGTAGCATCAACCTGGGGGAACAGAAGATGCCTCATCCCTAGGGACCCTGGGGACCATCAGGGTGTCTGGGCTTCCCAGCTTGCTCAGTGGTAAAGAACCCGCCTGCCAATGCAGGAGATGCAGGTCCCATCCCTGGGTTGGCAAGAGCCCCTGGAAAAGGAAATGGCAACCCATTCCAGTATTCCTGCCTAGGAAATCCCATGGACAGAGAAGCCAGGTAGGCTACAGTCCATGGGGTTGCAAAAGAGTTGGACACAATTTAGCAATTAAACAATTTCGGGGCCTACCTTTCCTGGGATCAGCATCTCTCCTTTGGGGATTCTGTGTTGGCACAGAGGGTGGCAGCTTCCCGTGTTGGCAGCCTTCTCCCAGATTGGGAGTCAAGGCACTTGACTCGAATGTCACTCTCTCTCAGCAGGACCTAAACAAGCCATATCACCTCTCTAAAGCCCACTGGCACTTTTAGCAAATATGAGCACTTCATTAAGAGTCCTCCAGTTGATAACAACAGTAGTAATAATAACAATAGCTGCTTCTGTGTATTGCATGCTTACTCTGTGCCAAGCGCTCTGCTAAGCCCTTGACATTCAGGAGCTAATTTGATTCTCCATCAACCTTGAGAGGCAGGGTCTATTAATATAGACCCATTTTACAGATGAGGACCCTGAAGCACAGTGAAGTTCAGTATCTTCTTCAAGATCCCATGGCTGGTTAGTGGTGGAGGCAGAATTTGAGTCCGAGTATGCCTAGCACTTGCTCTTGACCGTTCCACAGCTAGGACAGTCTGGAATTCTGTGGGTTCCATGTTCACACATCCTCACCGTGCTGTGGCTTCAAAAGGGACAGCAGGGTAAGGATGAAGAACACAGGTGTACCTGGGCACTCACACCAAGCCAGCCTATCTGGGTGTTTCCTTCAGTGGTTTAACTTTCACTCTATACCAGATCTTTTGCTCAACTCTTCATATGCATCATTTAGTTCTCAGGACAAACTTACCAGGTTAGTGCTATTCTACCCATTTCACAGAAAGGGAAGTTGAGGCCCAGCAAACTCAATGGCTTCCCCAAAGTCTAACAGGAAAATTCAAGCCCAAGTCTGCCTAGTCCCTAAAGGTGTGCTCTTTCCACCTGTCCCTTCCTCAACGAGATACCACCCACACTGACCTGTGCTCTCCCTCTCCTGTCTCCCCCAG
Seq C2 exon
CCTCCAGCTGCGGGGCCCCCATCTTCCAGCCCAACCTATCAGCCCGCGTGGTGGGAGGAGAGGACGCCATTCCCCACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497:ENSBTAT00000034040:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=45.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development