MmuINT0043660 @ mm10
Intron Retention
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141845182-141846283:-
Coord C1 exon
chr4:141846229-141846283
Coord A exon
chr4:141845273-141846228
Coord C2 exon
chr4:141845182-141845272
Length
956 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
GCACCTCCCTCTCTCCCCAGCCT
3' ss Score
9.58
Exon sequences
Seq C1 exon
CTCAACACCTGAACCATGTTGGGAATTACAGTCCTCGCTGCCATCCTGGCCTGCG
Seq A exon
GTAAGCTTGGGAGTGGGGACCAGCTGCAGCCAGCTGGTTGTAAGATCAAGCTGGCCTTGGGGGCGTCCTCTGCTCCCCCAAAAGGCACTTTTGGGGTCCTGTGTGGATTCACCCACTGAGCGAGCATCTGTGTGTTGGTTGAGCCTCTTCCAGATTGGTAGGTCCTGGAGAAGGGATGGAGAGCTTCCTCCAGAGTTTGAGGTTTAGTCAGGTGACCCTGAACAAAGCCCACAGTAGGCACTTCACTCTGGGTTCACTCCAGGGAGCCCCAGTCCCACAGAGTTCTTTGCTCTCCCGTTTATTGGTGACATTCTCCCAGATCACAAACTGAGGTTGTGACCGGTGTTTGGTTTGGTTTTGACAAGTGAAAGCTCTTGACTAAGAATCCTAAGGGCTCTCTAGACACAAGAGCAAGCTAGACCCTACATGTACTGGGTCTGTCTCTGTCTCCATTCAACAGCGGGAACTCGGAGGTCCAGTGGAGCTCAGTATCCTGCCAGAAGACCACATACTGCCTAACAGCCAGAATGCCGGCTCCATCGCCTCACCTCAGAGCAGACACTCTTAACTCATCCACACAATGTCCGAGACAGAGACATGATAGTGTGGGACTCTGAGTGGTCCATGTTGAGTGGCCCTCCATCACACACTGCACTGTGACCTACAGAAGATAGCCTTAGTCCCTCAAGAGCACCAGTCACTGCCTGTTGCTCCCACTTCTCCTTCTGTGTGGTTCTTTAAATGTGTCAAGTGGCTTAGTTCTCGGGAGACTCCCTGATTGAGGTCATTCTTCCTGCATCACACACACACACACACACACACACACACACACACACACACACACATGTGGACTCTCCCCAGTCACAAAGTAGAATATGAACCACCAAACAGGAGCTTTCCCATCTCCCCCTACCCAGAGGGCCAGCCTGCTCACCTGCACCTCCCTCTCTCCCCAG
Seq C2 exon
CCTCCAGCTGTGGGGACCCCACCTTCCCACCCAACCTGTCAGCCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAAAGCTGGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478:ENSMUST00000105781:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(2.1=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types