GgaINT0134351 @ galGal3
Intron Retention
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4996571-4996797:-
Coord C1 exon
chr21:4996746-4996797
Coord A exon
chr21:4996663-4996745
Coord C2 exon
chr21:4996571-4996662
Length
83 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCATGCTGGGTGTCATACAGCCT
3' ss Score
3.87
Exon sequences
Seq C1 exon
GAGCCTACAACCATGCTGGGGGCCGTGTGTCTCGCCATCCTGCTGGGCTATG
Seq A exon
GTGGGTGAGGGCATGGGGAGGGGGGTGTTGATGGGGCTGGGGGCCATACCCATGCTGATGTCCCCATGCTGGGTGTCATACAG
Seq C2 exon
CCTATGGATGTGGGCAGCCAGCGGTGCCACCGCTGTTAGGCGCTCGCGTGGTGGGCGGTGAGGACGCCCGTGCTCACAGCTGGCCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701:ENSGALT00000022280:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(7.4=45.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTACAACCATGCTGGG
R:
CTGCCATGGCCAGCTGTG
Band lengths:
144-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]