MmuINT0034145 @ mm9
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141381445-141381918:-
Coord C1 exon
chr4:141381858-141381918
Coord A exon
chr4:141381540-141381857
Coord C2 exon
chr4:141381445-141381539
Length
318 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TCTCAATCCTCTCTTCACAGCCC
3' ss Score
8.82
Exon sequences
Seq C1 exon
ACAGACGTCCAGGGACACACCATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAG
Seq A exon
GTAACCTGTCTGGTGAAGCTGGGAACCTGAATCTCCTGCTCTTCCCTTGAGCTGCTGTCCCCTCTCCGGTCCCTCCTATAGCAGGACATGGTGACACACTCCTTGTGTCAGCCTCAAGAACCTAAGACAGGAGGGTGGCAAATTTAAGGCCAGCTCCAGTTAACTAATTCAAAGGCAGCTAGGAGCTGGGGTGGAGGACAGGACTCATGGACCTCGAAGATCATTCCAAAGCAAGGGTTTCCTGTTGGGGTTCAGGTGATTTTGCCCACAATTATCACTCCCAACCAACACAATCCTCTCTCAATCCTCTCTTCACAG
Seq C2 exon
CCCTCAGCTGTGGGTACCCCACTTATGAGGTGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-Cela2a:NM_007919:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: