RnoINT0033814 @ rn6
Intron Retention
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160383299-160383782:-
Coord C1 exon
chr5:160383722-160383782
Coord A exon
chr5:160383394-160383721
Coord C2 exon
chr5:160383299-160383393
Length
328 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TCTCAACTCTCTCTTCACAGCTC
3' ss Score
10.42
Exon sequences
Seq C1 exon
ACAGACATCCACGGACACACCATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAG
Seq A exon
GTAACCTCTGTCTGCTGAAGCTGGGAACCGGACCCTCCTGTCCTTCCCTCCAGTGGCTGTCCCCTCTCCAGTTGGTCCCTCAGTTATAGGACACATGGAGTAGGGCACGGTGACACACTCCTTGTGTCAGCCTCAGGAGCCTAAGACAAGAGGGTCGCAAATTTAAGGCCAGCTTCAGTTACAAAGGCGACTTATGAAGCAGGGGTGAAGGACAGGACTCACGGACCTCAAAGATCATTCCAAAGCAAGAGTTTCCTGTTAGGGTTCAGATATGTCCACAAATACCGTTCCCAACCAACACACTTCTCTCTCAACTCTCTCTTCACAG
Seq C2 exon
CTCTCAGCTGCGGGTACCCCACTTACGAGGTCCAGCATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCAGTCCCAACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628:ENSRNOT00000018349:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]