GgaINT0134436 @ galGal3
Intron Retention
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5728781-5729475:+
Coord C1 exon
chr21:5728781-5728823
Coord A exon
chr21:5728824-5729386
Coord C2 exon
chr21:5729387-5729475
Length
563 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TATCTTTGTATGTTTTCCAGCCC
3' ss Score
8.04
Exon sequences
Seq C1 exon
ATGCTTGGAATCCTCTTTGCTGTGCTGACTCTGGCAGCTGCAG
Seq A exon
GTATGTGCTCAATTTCAACACCAGTTCTGAAAGAAAAATGAATTAAAATCTAATAGCAATTTTTTTTTTTTTGAAAAAGCAGAATGAGAATTAATTAATTGCTTTTGTTAATTAAAAGGTTTTCTCAAAACGGCAACTACGTACTACATTACTCTCTTCATATCACAGAGGTTCAAGCAGCATTACTGCTCTCAGCCTGCAGCAAAAAGTTATTTTACTTAGCTTGAATACACTATAACACAGTCAATCCATGCCAGATTGTTTTGCATTTGCTATGAGCTACATCTCAGTTGACTCATGAGAACTTGGCTGAGCCAACATGATTTGATTACCTGACAAAAAACAAATAGGCTTTATATAACATTGCTCAGCCTTGACTGATGGCTGTATCTTCACCCAAAACACATCCAATTGTAGGCTGTATCTCTGCCTTTCAACGTTCTATACAAACACAGTCTATATTAAACCAACAAACCAAAAGAACAACGAACAAACCCAACCTCTCCTACAGAATTCTTTTTCAGTACCTACTTTTAAAACACATATCTTTGTATGTTTTCCAG
Seq C2 exon
CCCTTGGCTGCGGGGTTCCTGCCTACCCACCTGCTGTGTCTCGAGTTGTTGGAGGGGAAGATGCAAGACCATACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]