MmuINT0070050 @ mm9
Intron Retention
Gene
ENSMUSG00000078520 | Gm13011
Description
predicted gene 13011 [Source:MGI Symbol;Acc:MGI:3651647]
Coordinates
chr4:136964040-136965706:-
Coord C1 exon
chr4:136965635-136965706
Coord A exon
chr4:136964126-136965634
Coord C2 exon
chr4:136964040-136964125
Length
1509 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTCTCAATTGTCACCTCTAGCCT
3' ss Score
6.62
Exon sequences
Seq C1 exon
TCCACATCTTTCTTATCACCCTGAAGCTCACCATGCTCCGACTGCTGAGTTCCCTCCTGCTTGTGGCCCTTG
Seq A exon
GTAAGCCCTCAGCTTGTCCCATGTCACCTTGCTGCATCAGCCTGGGAGCCCCTGAAATACGACAGACCCTCACTCTTTGCCCCCCTGGGAGACACTCCATACCTGCTTCTACAGAAGGTCTCAGCTTCAACTAGGACAGGACTGTAGGGCCTTGAGCTTGGTTCATGGCCAGGAGTGGAGGAGGCAGGCAAGCTTCAGATGACCCAGCTCAGAAAGACTGGGAGCCCACGGGGCAAGACTCCTTGAGGGGACAATGGATGACCTCCTGGCTTAAGGTCTGAACTCTGAGGTTTGATGGCTCCAACTCAAACTTTCAGTCGTCTGTGACACAGCCCACAAAGCTTCCCTTGGTGGACCATATTGTACCCAATGGCATTTTCTAAGTGTCTACTGTGTCAGGCAGGCGACGGTGGGACAGGCTGTTTTTCTTCTATGACCCCAGGTAAGTCAGCCTAGTTTGGAGTCAGTAGGGAAACTGACCTTTAGAGTAACACAGCTCATCCTGAGTCAGTGGCCGAGTCTCACTTCGTACCCAGCTGTGTCACTCAAACAGCCACTTCATAAGTCACCTTTAAAAAAAAAGTTTTTGTTTGTTTGTTTGTTTGTTTTTAGAAAGTCTCATGTTATAGCTCAGCCTGCTTTTCCTTGAGTTCCTAGCAATCCCACTGCCTCCCTCTCTCAAGCACAAGGACTATAGGCATGAGCTAGCATGTCACTTTTAGCTGTAATTTTTTTATTACGTTTATTATTTGTTAGGGACTGTATGTGTGTTACAGAGCTCATGTGGAGACCAGAGGACAACTTGCAGGAGTCAGTTCTCTCTGTTGGGATCCCAGGGATAAAACTCAGGCCATTAGCCCGGGTTACCACCCAGCTAGCCCAATTTTTTCACTCTGTTAGCCCAGGCTTACCTCAAACCACTGGCTGATCCTTTGAGCTCAAATCCTCAATGCTGGGATCACACCCTAATGCCCAGCATTTGGGTTCCAGAGTTTGGGGGCTCCCTGACTACCAGGCTCAGTCCCAAGTCTTCAGTCTTTGAGATAAAAGAGACCCTGCCCTCCTCTGAGAAGCCCCTTTGTAGGTTAAATGCATAAACGCTACTTCATACCTGACTAGTGAAGTCTAGAGAGGGGAAGGGCTCCCCCTCCTCTTCCTCCTCTTCCTTTTCCTCCTCCTCTTCCTCTTCTTCCTCCTCTTCCTCTTCTTTATCCTTCTCTTCTTCCTCTTCTCCCTCCTCTCCCTCCTCTTCCTCCTCTTCCTCTTCTTCCTCTTCTCCCTCCTCTTCCTCTTCCTTTGCTTCTTCCTTTTTCTTTTTAGACAGGATCTCTCTGTGTAGCATTGGCTCATCTGGAATTCACTATATAGGTCAAGCTGGCCTTGAATTTACAGAATTCAGCTTGCCTCTGCCTCCAAGTGCACCATGCTCAACCAGCCCCACCCCTGACCTGAAGCCCCCTTCCTTCTGAGGACACTCTGGCTGACTGGCTTCTCAATTGTCACCTCTAG
Seq C2 exon
CCTCAGGCTGTGGACAGCCTTCCCACAACCCCTCCAGCCGAGTTGTCAATGGCGAGGAAGCTGTTCCCCACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078520-Gm13011:NM_001126318:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(5.6=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: