HsaINT1007170 @ hg38
Intron Retention
Gene
ENSG00000142615 | CELA2A
Description
chymotrypsin like elastase family member 2A [Source:HGNC Symbol;Acc:HGNC:24609]
Coordinates
chr1:15456729-15457174:+
Coord C1 exon
chr1:15456729-15456793
Coord A exon
chr1:15456794-15457085
Coord C2 exon
chr1:15457086-15457174
Length
292 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GACCCTTTCTCTTTTCACAGCCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
CTTACAGAACTCCCACGGACACACCATGATAAGGACGCTGCTGCTGTCCACTTTGGTGGCTGGAG
Seq A exon
GTAAGTCCTGTTACCCAGAGGCACTGGTTTCCCATGCCCTGGTGGGGCTGGAAATGGGATCTTCCTGTCCTCCCCTCTCGCCCCCACCCAACCCCTACTGCATTCAGACCTATAATCATAAGAACATTGGAATGGAGTTTCAAAGAATTGGAGCAAAGAGCAGGATTCTATGACCTCTTGGGATCCTTCTAGAACAAGGGTTTTCTATTTGGGGGGTCAGAATGCGCAGCAAGTGTAGTTTACATTGTGTGGGTCGCTGCTTCCTGACTCAAGACCCTTTCTCTTTTCACAG
Seq C2 exon
CCCTCAGTTGTGGGGACCCCACTTACCCACCTTATGTGACTAGGGTGGTTGGCGGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142615:ENST00000359621:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACTCCCACGGACACA
R:
CTGCCAGGGCCAGCTGTT
Band lengths:
152-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains