HsaINT0036111 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:10131565-10132123:+
Coord C1 exon
chr12:10131565-10131663
Coord A exon
chr12:10131664-10131934
Coord C2 exon
chr12:10131935-10132123
Length
271 bp
Sequences
Splice sites
5' ss Seq
TGTGTATGT
5' ss Score
3.3
3' ss Seq
GTCATTTTTTTAATGTGGAGTTC
3' ss Score
-9.25
Exon sequences
Seq C1 exon
CACCTCCAGCTCCCTCTCATGTATGGCGTCCAGCAGCCTTGTTTCTGACTCTTCTGTGCCTTCTGTTGCTCATTGGATTGGGAGTCTTGGCAAGCATGT
Seq A exon
GTATGTACTGCCCCTGTTTTTGTCAAGAGGAAGTATCTAGAATTTCAAATATTTAGCAACAAAAGTTTATTCCTTCAGTGGAAGATTTATAATAATGATAGGTGATAGGCCCACAAGGAGGACTTACAATGTGGAACTTAGTCTCTTTCCCTCACTCCTGTAGAGTAATTGCTTTCCCTACCCCTTTAATCTTTATACTACTTCTGCAAATGATAAAGGATGATGGCTCTATTGAGAATTTACAATTTTTTGTCATTTTTTTAATGTGGAG
Seq C2 exon
TTCACGTAACTTTGAAGATAGAAATGAAAAAAATGAACAAACTACAAAACATCAGTGAAGAGCTCCAGAGAAATATTTCTCTACAACTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCACCACACTGCAAACAATAGCCACCAAATTATGTCGTGAGCTATATAGCAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
-CLEC12A:NM_138337:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCTCCCTCTCATGTA
R:
GCTATATAGCTCACGACATAATTTGG
Band lengths:
276-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)