HsaINT0036111 @ hg38
Intron Retention
Gene
ENSG00000172322 | CLEC12A
Description
C-type lectin domain family 12 member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr12:9978966-9979524:+
Coord C1 exon
chr12:9978966-9979064
Coord A exon
chr12:9979065-9979335
Coord C2 exon
chr12:9979336-9979524
Length
271 bp
Sequences
Splice sites
5' ss Seq
TGTGTATGT
5' ss Score
3.3
3' ss Seq
GTCATTTTTTTAATGTGGAGTTC
3' ss Score
-9.25
Exon sequences
Seq C1 exon
CACCTCCAGCTCCCTCTCATGTATGGCGTCCAGCAGCCTTGTTTCTGACTCTTCTGTGCCTTCTGTTGCTCATTGGATTGGGAGTCTTGGCAAGCATGT
Seq A exon
GTATGTACTGCCCCTGTTTTTGTCAAGAGGAAGTATCTAGAATTTCAAATATTTAGCAACAAAAGTTTATTCCTTCAGTGGAAGATTTATAATAATGATAGGTGATAGGCCCACAAGGAGGACTTACAATGTGGAACTTAGTCTCTTTCCCTCACTCCTGTAGAGTAATTGCTTTCCCTACCCCTTTAATCTTTATACTACTTCTGCAAATGATAAAGGATGATGGCTCTATTGAGAATTTACAATTTTTTGTCATTTTTTTAATGTGGAG
Seq C2 exon
TTCACGTAACTTTGAAGATAGAAATGAAAAAAATGAACAAACTACAAAACATCAGTGAAGAGCTCCAGAGAAATATTTCTCTACAACTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCACCACACTGCAAACAATAGCCACCAAATTATGTCGTGAGCTATATAGCAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322:ENST00000304361:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(25.0=82.4)
A:
NA
C2:
PF083915=Ly49=FE(56.2=100),PF054737=Herpes_UL45=PU(3.3=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCTCCCTCTCATGTA
R:
GCTATATAGCTCACGACATAATTTGG
Band lengths:
276-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains