HsaEX0015587 @ hg38
Exon Skipping
Gene
ENSG00000172322 | CLEC12A
Description
C-type lectin domain family 12 member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr12:9971415-9979524:+
Coord C1 exon
chr12:9971415-9971687
Coord A exon
chr12:9978966-9979064
Coord C2 exon
chr12:9979336-9979524
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTAATTTTGCTTTCCACAGCAC
3' ss Score
7.38
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
TTTGCAGACATATGGGTGATTGGTACAGTAGGTTTATAAACAGAAGTTTAAACTTGTAAGCTTAAGCTTCCGTTTATAAACAGAAGTTTAAAATTATAGGTCCTGTTTAACATTCAGCTCTGTTAACTCACTCATCTTTTTGTGTTTTTACACTTTGTCAAGATTTCTTTACATATTCATCAATGTCTGAAGAAGTTACTTATGCAGATCTTCAATTCCAGAACTCCAGTGAGATGGAAAAAATCCCAGAAATTGGCAAATTTGGGGAAAAAG
Seq A exon
CACCTCCAGCTCCCTCTCATGTATGGCGTCCAGCAGCCTTGTTTCTGACTCTTCTGTGCCTTCTGTTGCTCATTGGATTGGGAGTCTTGGCAAGCATGT
Seq C2 exon
TTCACGTAACTTTGAAGATAGAAATGAAAAAAATGAACAAACTACAAAACATCAGTGAAGAGCTCCAGAGAAATATTTCTCTACAACTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCACCACACTGCAAACAATAGCCACCAAATTATGTCGTGAGCTATATAGCAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083915=Ly49=PU(25.0=82.4)
C2:
PF083915=Ly49=FE(56.2=100),PF054737=Herpes_UL45=PU(3.3=3.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAATTGGCAAATTTGGGG
R:
TGTTTGCAGTGTGGTGGAGAG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development