MmuEX0011626 @ mm9
Exon Skipping
Gene
ENSMUSG00000053063 | Clec12a
Description
C-type lectin domain family 12, member a [Source:MGI Symbol;Acc:MGI:3040968]
Coordinates
chr6:129300262-129315321:+
Coord C1 exon
chr6:129300262-129300529
Coord A exon
chr6:129303370-129303468
Coord C2 exon
chr6:129313912-129315321
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTTTATTTTCACAGTAT
3' ss Score
7.57
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTGGCTCATAGACACATATTTGAGAGTCTGGCATAGTGGTTTTTCAAAAGGAAATTTGAGCTTGTGAGGTTAGCCACAGTTTACAGAGGGTTGAAAGTCTAGGTAGGCTTACTTAACTGTCAGCCCTCTCACCTTTTTCGAAGGACATTTTCTGGAGCCTTCTTTGAATATTCATCAATGTCTGAAGAAATTGTTTATGCAAATCTCAAAATCCAGGACCCTGATAAAAAAGAAGAAACCCAGAAGTCTGACAAATGTGGGGGAAAAG
Seq A exon
TATCCGCCGATGCTTCCCATTCACAGCAAAAAACAGTCTTGATTCTGATTCTTCTATGCCTTCTGCTGTTCATTGGAATGGGGGTCTTAGGAGGCATCT
Seq C2 exon
GTCTGAAAGAAGCACAGATGACATAGATAAGAAGTACTGCGGATATATAGACAGGGTCAATGTTTATTATACATACTGCACTGATGAGAACAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAGTGTGTTGAATGGCCTCCCAGAGGATAGCAGGTAGCTACTCTGAGTTGCTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAGGGCTCATTTGAATACTTGGTCCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGGAGGTTGTGTCATTGAGAGTGGGCTTTGCGTTTTCAAAAGCCCATGCCATTCCCAGTTAGTTCTCTATCTTGTGCTTGTGGATTGAGCTGTGAGCTCACAGCTACTGCTTAGGACCTTGTCTGCCTGCATGCTGCTATCCTCCTCACCACAATGGTCATGGACTCTAACCCTCCCAAACCAGGAGCCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053063_MULTIEX1-1/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF154661=DUF4635=PU(12.6=45.2)
A:
PF154661=DUF4635=FE(29.7=100),PF0033515=Tetraspannin=PU(21.9=82.4),PF0139217=Fz=PU(0.1=0.0)
C2:
PF0005916=Lectin_C=PD(36.4=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCTGACAAATGTGGGGGA
R:
CTCTGGGAGGCCATTCAACAC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: