RnoEX6015295 @ rn6
Exon Skipping
Gene
ENSRNOG00000054860 | Clec12a
Description
C-type lectin domain family 12, member A [Source:RGD Symbol;Acc:1592991]
Coordinates
chr4:163112301-163121217:+
Coord C1 exon
chr4:163112301-163112391
Coord A exon
chr4:163120400-163120498
Coord C2 exon
chr4:163121029-163121217
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTTTCTTTTCACAGTAC
3' ss Score
8.69
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
ATGTCTGAGGAAATTGTTTATGCAGATCTCAAATTCCAGGACTCTGATAAGAAAGAAGAAAGCCAGAAGTCTGACAAATGTGGGAGAAAAG
Seq A exon
TACCTTCTGCTGGTTCCTATTCACAACATAAAACAGTCTTGATTCTGATTCTTCTATGCCTTCTGCTGTTTATTGGAGTGGTGGCCTTAGGATGCATCT
Seq C2 exon
TTTATACAACTTTGGAGACAGAAATGATAAAGTCAAATCAATTACAAAGAGTCAAGGAAGAACTTCAGGAAAATGTTTCCCTACAGCTGATGCACAATCTCAACAACTCCAAGAAAATCAAGACTCTTTCTGCTATGCTGCAAAACATAGCCACCCAGTTGTGTCAAGAACTGTCAAAGAAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054860-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0033515=Tetraspannin=PU(24.6=91.2)
C2:
PF0033515=Tetraspannin=FE(50.0=100),PF102344=Cluap1=PU(84.9=96.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAAGTCTGACAAATGTGG
R:
TGCAGCATAGCAGAAAGAGTCT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]