HsaEX0015587 @ hg19
Exon Skipping
Gene
ENSG00000172322 | CLEC12B
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]
Coordinates
chr12:10124008-10132123:+
Coord C1 exon
chr12:10124008-10124286
Coord A exon
chr12:10131565-10131663
Coord C2 exon
chr12:10131935-10132123
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTAATTTTGCTTTCCACAGCAC
3' ss Score
7.38
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GGCTCATTTGCAGACATATGGGTGATTGGTACAGTAGGTTTATAAACAGAAGTTTAAACTTGTAAGCTTAAGCTTCCGTTTATAAACAGAAGTTTAAAATTATAGGTCCTGTTTAACATTCAGCTCTGTTAACTCACTCATCTTTTTGTGTTTTTACACTTTGTCAAGATTTCTTTACATATTCATCAATGTCTGAAGAAGTTACTTATGCAGATCTTCAATTCCAGAACTCCAGTGAGATGGAAAAAATCCCAGAAATTGGCAAATTTGGGGAAAAAG
Seq A exon
CACCTCCAGCTCCCTCTCATGTATGGCGTCCAGCAGCCTTGTTTCTGACTCTTCTGTGCCTTCTGTTGCTCATTGGATTGGGAGTCTTGGCAAGCATGT
Seq C2 exon
TTCACGTAACTTTGAAGATAGAAATGAAAAAAATGAACAAACTACAAAACATCAGTGAAGAGCTCCAGAGAAATATTTCTCTACAACTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCACCACACTGCAAACAATAGCCACCAAATTATGTCGTGAGCTATATAGCAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083915=Ly49=PU(25.0=82.4)
C2:
PF083915=Ly49=FE(56.2=100),PF068516=DUF1247=PU(60.4=90.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAATTGGCAAATTTGGGG
R:
TGTTTGCAGTGTGGTGGAGAG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)