HsaINT0036185 @ hg19
Intron Retention
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]
Coordinates
chr12:10241723-10251605:-
Coord C1 exon
chr12:10251407-10251605
Coord A exon
chr12:10241822-10251406
Coord C2 exon
chr12:10241723-10241821
Length
9585 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TTCTCTTCTGTTCCCTGCAGAGC
3' ss Score
12.12
Exon sequences
Seq C1 exon
CCTTGCTTCCTGAACTAGCTCACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
Seq A exon
GTACCCTGTCTCCTGGAGTCCAAATAGACCACAGTCCTTGTGAAATGTGTGAGATGATCTATCCCTCCTAGAAATGGAGATATTTAGCTTGCATCTTATAATTTTATTTCCAATTACTCGCCCTGTGACATAGTAGTGATTTTTTTTTTTCAGTTATATTCAGTTCCATAATTCCCACACTTAGAGAAGGATTTTATTTCCTGGGCCACTCAGCCAATCTAAAGCTAAAATATGACTTCAGTTCTAGTGAAAAGGACTCACATGGTAATATACACAGGACTAGGTTCTAGGTCCTAAACCAGGTATGCCACTTTCCTTCTGTGTAACTTTGGATGAGTTGTTTAAGTATCCTGGTAGCATCATATTCTTTATTTATAAAATATTAACGGCCACAAACATGTATAAAGGGCTCATTATGTGCTGGCAGTGTTTTAAATACTTTAAGTATATTAATTCATATTAACTTGACTTAATATTAAATAGAAGTAATAAAACTTCCTTTACAAGGTGGTTGTGAGTACTGAGAATGATAAATTATGTAAAATATTTGAATGTCTGTCTGATCTGATATAGACTGACACAAAATTGCTGAAAGGAACACTTTAGGTTCTTAAGAAATGGAATGTTGAAAGGAATCCCACATTTTAACATTCATTCAGTGCCTGTGTTTTAATATGCCCTTTCCCTTCTGATTATATCATTGTTTTCTTCACCTTTGTAAATCTGGATATACCTTTAAAAAAAAAAAACTATCCTGTTCCTTATTTCTTTATCAAATAACTTTTAGTTTTCCTTCCTTTCTCCTACTAAACCCTCCATTCACTTTCTATTTATTTCTATTTATTAAATGACCCTCCACCTGAAACCTACTAATATGGCTTTTTTTTTTTTTAACTAAACTACCCAGTAAGCTGTTAAGGGACATTGGGGATTTCCAACCTCTTTGAAATGAAGCTAAGTGACAAAAGTAGGGATGTCAGCTTTTGTAGCCACAGGATATGTGTAATAGGATACAAAGCGTTTTCCTCCAAAAAAACTTACGAAGAGTCCATTTTTACGGCTGTGGTTTTGAGTAGCTTGTATATAACTTCATTTTCCACCTTTGACTGGAGCCAGGAACTCTGTCAAGGACTAGAGATCAGCATAATTAAGAACAGCATGTACAAATAAGTTCTGCTGAGGTTGAAGGGTGGAGAGGGAGGTGGAGCAAGATAAAACACTAGCTGCAACATCTGGGAGCTTCTTTGTAAGAAATGGATATTGAAACAGTAGAAGTGGAGATTACAAAGAATTGTCTTGGAAGAAATCATCTGGAAATAGTTATCTTAGGCAACATATATGAGATCTTGTTTTCATCTTTTTATGGTAATACAAACATTTAGGGGAATACCATCATAGAAGTATAATTATTTCTTAGATAAACATATCTGATATACCTTCGCTGATAAAAATAACAGCAGAAATCACTCAGAAATTTTCGGCAATGTGGAGGATTCAGATTCAACATAATGATGTGATACCATTAAGAGCTGGCAACTTTTATTTTTTAGAATTAATAAAAATAAATCACACACACATTCATTTAATTTCTAGACTTTTGTCAATAACAATTGACGTAACAACTATGTTTGTGTTTAAAAATGCCAAACAATTAAGATAGTAAAAATGCCAAACAATTAAGATAGTGAAAATGAAAAACAACAACCTCATACATTTTTCACAAACTTATGTTTGGGGTCATGTTATCCTAGTACTGAGGATATAATGTCCAATGTGATATGGTCCCTGTTCATAAGGAAATTGAAAGTCTAATACAATTCTCAACTAAGGAGTAAGTATAATAAGGTGTTATGGCAGAAGCATGTACAGTACAGCCGAGAGCTTAACCAAGCTCTCGGCTTAATTTTTACCTAATTAAGTAGAGGAGTTCAGGAAAGGCTTAACAGAAGGAGCAACTGTGGAGTTGAGTTAATTTTAACATCTTCCACATAATAAGGAATCGGGAGTGAGGGTGTTTGAGAGGCTGGGGACACTATAGACAGAGAGACGTATGAAGGGAAAGTCATGAAGGTTTTCAGTAGCTTTGTATTTTTAGAGAACTATAAGCAATATGTATGGCGTAGGTGTAGAGTTGGAGGAGGGAAACTTAGCAAAGGGGTAAGTCTGGCAAGTTAAGGAGGGATTTTAGGGCATGCTGATCTAGTTTAATTCTATTCAATAGTTAAAATGAAGTCAATGCAGGATTTAGATAGGGAGAAACAAAATTTTGCATTTTGGAAAGACCTTCCTGGCTGCAATGGAAATGATAAGTTGAAGGTATATGAAACTGCATGTGCTGATACCAAATTTTTCCACTAGTCCAGTACAAGGGTAGAAAAACCTGAACTGAGGCAGTATAGTAAAAATAAGGAAAAAGAATCAGATATGAAAGATGTCGAGGTGTTGGAGTTTAGATAATCGGTGATTGGTTACATGTGAGGAGACAAGGAAAGGGACTTCGGTGGTAGGTTGACTAGGTTCTGTTTGATGTAATGTAGATGGTGCTGATGTTAACTGAGACAGAAACTATAGAAGGGACAGGAAAGATGATGAATTGAGTTTGAGTTTAAGGGGTCTGCAGAAGGAGGGACATGCATTTGGAGCTGTCCAAAGACACCCGTATATGCAGGATGTGGGTTGGGCTACATAGACATGTGGGAATTACTGGCATAGTAATTAAATAAATAAAGTAAATGAGGTACCTAAGTCATTAAGTCAAATAAATGGCTAGTAACTAAAATGTATGAGAGTGAGTGAGATCACTGAGGGAAGGAATGTAAAATGAAAACATGAATGAACAGAAGAGAGTGTCAAGGAGATAATCTGAGGGAATATCAACACCTGAGGAGCAAGAAGAATGAAAGATTCCAAAAGGAGCTACCAGGGATGAATAGCAGAGAGTGGTAGAAGCAGGAGTCTTGGAGAGAGACAACAAGGGCATCAAGAGACAATAAATTCAAGAGTAATGGAAAATTAGAGTAATGGAAGGACAATAAATTCAAGAGTTTTAGAAAAGTCAATGATAATGACTGTGAGTTTTAAAAACAACAAATAACAAATACTGCAGAGAGTTTAAGCGAAAGGAAGACTAAAATGATTATTTAACAATTTATCAATAAGGAGGAAAATATTTAGTTTTGACAGCAGTGGTTTGAAAAGGAACTGATGGTTACATAATAAAATAAACAATTTAAGTCATTTTCTCTTTTTCTTTCTCTCTTTTTTTTTGAAGATAAAATGGGTTATTGCTGAGGTATTACAGCATTGGGTGACAGATTTTAAGAATGATTTTTTAAGATGTGGGAAATTCTAACTCAATTGTAGATTGAAAATAAGTTCAGGGAGAGAACTTCACATTAACAGTACAGTAAGAGGAGAGAGGATGAAATAACTGACAGGCTGAGATTCCTGCCAGAGACTAAATTTTATCCTATCAAAAGAATATGAAAAATTACTTTGGTTAAATAATTTTAAAAAATTTAATAATAAATTCAAGTTCCTCTTTTCCCTTGTTCACATTAATTACAGTACTATTGAATTTCCCAGCGTTTTAGTTTTATTTCCTCAATTACAGCATAAATCCCTCATCACAGTCATGACATAAATCGCTGTTAACTGATTCAACAACTCTTTAAATCAAACCTACTAATGACAAGACATTATGGGATGTACTAGAGGAGCCTCTTTTTCAGGTGCTTAGAGAAGTGGAAGGAATACTCTAAATCAATAGTTGTAGTAAATGTCATTTAGTGCTATTAAATCAATGTTGGAGGCCGCAGAAGCAATATAGGAATGAATGAGTTACTGATTGAGTTTAGTTTTGCGAGTTCCCAGAGGAAGTGACATGATCTGGACCCATGAGGCTAAGAAGTAAAATGGGATCCTATTAGGAGGAGCCTGATACAGTACACTAAGAAACTGACTAAAACAGAAAGAGCCTTGGGAAACTTCTTCCTATGGAAGAGAGGAAGTATGATTAAATTTATGCTTTCAGAATTCATCTTGCTGGCAGAGTGGACATTTCATAATGTAGAAGGGAAAAGTTGCAAGCTGCTGTCATTCTATGATTCCAGATGCACTGCCATGTATAAATATTGATCTGAGATGTGTTGGGAGGATAGGAAGATGATTGAAAATGTCCAGCTCTGGAATCAGTCAGCTTGGGTAGCTCTGTGCAACTTAGTGACTTAGGCAACTTAAGTGACTCCTTGGTAATTCAATTTTTGTAAAGGTTGCTTCCAGTGAAATAATGTGTATCTAGAACACACTTATGGTTACTATTAATAACTATTTCTCTCTCTCTCTTTTTCAATACTCTCCATCCAATCATTCTATATAAAGACATGGAGAAACACAATCCTGGGGAGTTACTAATAGTTCATTAGTAACTATTGCTAATAGTAGCTGTGTGTTCCTGAATAAGCTGTCTAAACCTGCTAGGCCTCAGTTCCCTACCTGTAAAATGAGATAATAATATCTACCTTATAGGGGGTGTTTGTGAGGCTAGATGAGAACATTCATATAAGACATTTTTCTCAGTAACTCAAGAAATTTGAGCAATTATCATTAATGGTAATGTTGTTTTTGAATTATATTTCAGTAAATAATATCTGTTGATGGGGATATAAAATTGAGTCACCTAACTTTTACTGAAGATGAAAAATATAATTAAATTTCTAAATACTGTGAATTAGAACCTCAATGATATTCTAGAAATAGCTCATATGTTTTTAGATGTATACTCTTTTCAAATAATAGGAAGGATAACACAGATTTTCATTTAGAGAGTATGAAAATAGCAATATTTGAAATAGATTCATAAGAGAAAAGAAACCTGCATTTACATGAACACAGAAAAGCAGACTCAACCCGTGAACTCAGATTCCCATGAGGAAGTTTCCTATGTGCCATATGTGAGGATTAAGGAAACAAAGACGTTTACATTTCAAAATACAAAGGGATGAAAAAGTGCTTTCTGAAATATTATGTACATTGCCACCAGTTTTGCCCCCATGTCTCTGTGATTCCTGACTGGCTCATGGAAAAGTGTGCAGAGTATAGCGTTAAACATAATTTAATCCTAGCTCTGCAACTAGTTTGTAACATGCACATTATTTAAACTCTCGGTGTCTTCTCCAGCTTTTAAGACCTTTTGCATTTCATAGGTATACTAATAGACTGTATATGGTAATGTCAGCTTAGTTTCTTGGGTGGAAAACAAAATTTTCCCTCTCTGATGCCTGATGAAGGGTAACTGGTTAAGTCTGACAACTCTCCACCCACAAAGTTTCATATAATTACACAGTAATTGGTATCCAAAATTTGACCCTAGCACTAAGGCCTTTTATAGTATGGTTAATACTAAGAGGATACAGGAAAGGTTTTTTTTTTTTTTCTATATATATCTTATTATTCCTAGGGATGTTTATATCATTCCTTGGCCTGTCCACACCCCTTTCTAAACATGCCTCAGGAGACAGCAAAGGGGTTCTCTTCCAAAAAATAAAACCACAATAAAGCCAAACCAAACTCAAGCGACCTCCTAGGCATCTTATTTTTGTGAAAATCTGTCTCATGTTAGGGTGAGGGTGATCCCTGGAGAGAGACTTCAGTATGATTAGGAGCACTTGGAATAAAACTGAGAAACATTAGACTCACAGTTAGAAGAAAAACATCTAGAAGGAAAAATAGTATCAAAGAAAAAGAAAAAGTGAAACTTTCAGTTTCATGGACTTTCCGTCATGGGAGCTTGGTTTCCTGGAAGATGAACTCCCTAGGATTGTGTTTCTCCATGTCTTTTATATAGAATGATTGGAAGGAGAATTTTGAAAAAGAGAGAGAGAGAAAGCGAGAGAGCAAGAGGGAGATGGGAAGAGAGAAGAAAAATTTCAAAATATGAAAATTTGATCAGAGAAAGAGGATTTCTTAGAAGAGATTTTTAAAAACTTTTTAAAGCCTGTTATACTTCTTTTATTTTTTCTGCCCTAGAGGCAATCTTAGGAAGGATCATGTATTTTTTTTCTTTTCATGAATATAATTATTATTGAAAGATGTTCTGATTTCTAAAGTCCAGGCCCTCACTTCACAGTAGGAATTTAAATTCACTCTTTTTGGTCCTTTGGGCAGAAAACAACAACTCCTATGTCCTCAATATTATGCGAGAGAAAGCAGATTTATTTTATTTTATCTTATTTTATTTCATTTCATTTCATTACTACTTTTGAGAGAAGATCTTGCTCTGTCACCCAGGCTGGAGTAGAGTGGCACGATCACGACTCACTGCAGCCTTGACCTCCCTGGCTCAAGCAATCCTCCCACCTCAGCCTTCTGAGTAGCTGCGACTACAGGTGTGTGCCACCATGGCTGATGAATTTTAAAAATTTTTTATAGAGATGGGGGTCTCACTATGTTGCTATCTTTTGTAGAGATGGGATCTCACTATGTTGCTCAGGCTGGTCTCGAACTCCTGGCCCAAAGCAATCCTCCTGCTTCAGTTGGGAGGATTCCAAAGTGATGAGATTACAGGCCTAAGCCACCGTGCCTGGCGGAAAACAGATTTATAAAGAGATAAATAAGTTGGTTGACTGTCATAGTTCTTCTCCTTTACTTCTTATTTTTAATTTCAGCCAGACAAATATTAATTATAAGAGGTCACAGGATTTAAAAAATTATTATGACTTTGAGATGCATATTAATGTAACTGTGTTTGAGTAAGGGTAGGCAGGCATATAACACAGGTATTTGTATATAATGGACCTATTCATTCATTTATTTAAATTTAATTGAGCTTATTTCAACTACTGCCCTAGGAATTGGGTTGCAATAATGGATAAATAAATATTTTCCAAGAAGGAGCTTAATTTTTCCTGGAGTAAGACACATATAAGCTAAATGAAATAACAAAGATATACAATATATTTAATGGTAATAAGAGGTATGTGGAAAAATAAAATCACCATGGTGGTGGGCTCACATAAGCACTTTTAACTATGGAATCTAGAAACATCCATATGATTAACTTTCTTGGACTGTATGGAAGTTTACAAATATAGGGTTTTGGAGAGGATGATTAACCCAAACTATATATTCTGCCTCTAATCTTTTTTTTTTTTTATGTTCTGCTGATCTGAAATACTTTTACAGTCAATACCACGAGAAAACCATCTTTTTCCAGAAAAACTAAGACTAAATCACATAGCTCAGTTAACTGAAGGAAACAGGAGGAAGCAAATCTCCCTTAGATTTGTTCATGATATAATCTCACAAAAGTCAATGTATAGAAACCAACATGGCTGGGAGATGTATTTAGCTGAGTCTGTTTTCTGCTGACATAGATGTTGCTGAAAATCAATAGCCTACAAAAAAAACAAAAACAAAAACCTGTAAACTTAACTTTGGAGAACCCACTTATCTCTTTAAAACTTAAATAGTTTAAGTCATATTAATTTTTTATTATTTCATTTTTTGATTATTTAAGCTGTCAAAGATTTACTCAGCCCTTATGTCCCAGGCACTACTTTCAGTAGTGGAAATGGACTGGTGGACAAGATAGACAAGATCATTGTTGTAATGGAATGTTAAATGGAGAGAAAGGAGACAGACAAAAAGAAACAAAAGTCATGAAAAGATTACCTAGTACAGGGTGAGTGATCTGCTAGAGATGGACTTACGGACCTCTTCCAAGGATGTGCCATTGAAACTGAAATTAATGCAGAGGCAGAAGTAGGGCTGATACAAGGTGCTTAGGGTCAAGCTTGATCAGATCAAGGACTAAACGGGAGACCGTTGTGAGGAGTACATGTGAGTGAGGGGAAAATAGTTCAGAAAGGCATGAAAGAGCTAAGGAAGGTCTCAATAAGACTAATGCAGGATTTAATTTTAAGTGCAATAAAGCTTTTGAAGTTTTTAAGTAGGGAAGTAGCATAATAAAATTGCCATTTTTTTTAAAAAAAGGAGCAATCTGTGAAAAGTGATTTGTATTTTATTCTAAATGTAATGAAAGCTACTTATGAAGGAGATGATTGCTAAGAAATAAGATTCACATTTAAAAATGTATCAGTATGTCTTCTCCGAGACTTTAACTTATTTTGCCTACTAGATTGTAAGTTCCAGAGGATAGTAATTATACTGTCTATTTCTATATTCTTTACTAGTTATCATTCCCCATTTGGAAATAACGTTTCATATAAATCTCTACCTAGAATTGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCGGGGTTAGAGGATCACTTGAGCTCAGGAGTTAGAGAACAGCCTGCAGCCTGGGCAACATGGTGAAACCTCATCTCCAACAAAAATATAGGAAAAAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTAGTTCCGGCTCCTCAGGAGCTGAGGTGGGAGGATTGCTTGAACCTTGGAGGCGGAGGTTGCAGTGAGCTGAGATCTCGCCACTGCACTCCAGCCTGGAAAATCTCTGTACCTAGAATGTATTATGTATAGGACCTTGCTAGAAGGAAAAGAATTTTCCTTTCAAAAAGCCCCTCCGATCTCTTTAATCTTTCTGTTTCAGAACGTGACTTGAATTCTCAGTGAAGTAGAACTAACGGGCTACAAAGAGATCACAGTTTGTTTGAGGGTTTCACTCTCTCTTTGTTTCATTTTTATCACAGTGCTAGATGCTACCTGCACCTGACTGAGACTCTTCCCTTCAGATATGTTAGGTCATTCAGATTCAGATAGGTGACCTCACTAGGTGAGGGGTCTACTCATGACTTACAGTAAAACCTCTGCAATTACTAGTCAAACTTATGGGAATGGAGGGCGAGGAAACCATGTTTGCCACAGTTTTAAAAATTATTTAACTGTTGCAAAAATAGTTTAGATTCATCTTTCTGAAATTGATTATCATGTTTCTTTATAATCTATTTTTGAAAAAATATAAATCAAATGAATGAATAAACAATATCCTTACAATAGCGGGACTTTCAATTAAGCAATTCCACAGAAAAACAGTAAAATTATTACTTCCCATTACTAACATGCAATTTGCCTTTTAGAAAAAGCATATACGGAACTTGGGGGAAGGGGGATGTTTTTCAAAAGTAACAACAAATTAATTTCATCTTTCCCCTGATTATGTAAAAAGTTGTCCCTTGGTAAGGTTCAGAGATTCTCAGGCTGTGTTTCAGACATTTTCGTGAGAGTCTTTCATAATTAGAATTTTGACAAGCAGAAGGTTGTACAAAGAACCACATAAAGATAATGGTAATGCATAGTGTGATTCAGTGCAAAGTAAGACTTGAGGGGTGGATACAAACGGGTGGGGCTTGTGAGAAAATCTAGCTGTGATAAGTGAGGCTTGCACTGAGCCTTATGATGATGTTTCTGAGGACAGAAAGCAGGTTATCCAGCCCCTGTTACCGTTGTCCAGCCTAATTTGTTCTTGTGCAGAATTAACTCCACTCCCTTACCTGTTATTGACTTAGATGCAAGAGGAAGAAAAAGCCAAACTCTGCTTTCTCTTCTGTTCCCTGCAG
Seq C2 exon
AGCACAGGGCTCCCTCTTCAACGTGGCGACCAGTGGCCCTGACCCTGCTGACTTTGTGCTTGGTGCTGCTGATAGGGCTGGCAGCCCTGGGGCTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048-CLEC1A:NM_016511:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PU(29.4=82.1)
A:
NA
C2:
PF066977=DUF1191=FE(30.3=100),PF083915=Ly49=PU(23.0=82.4),PF041569=IncA=PU(31.5=82.4),PF039189=CcmH=PU(24.4=58.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)