RnoINT0037145 @ rn6
Intron Retention
Gene
ENSRNOG00000060460 | Clec1a
Description
C-type lectin domain family 1, member A [Source:RGD Symbol;Acc:1566110]
Coordinates
chr4:163201975-163214678:-
Coord C1 exon
chr4:163214282-163214678
Coord A exon
chr4:163202074-163214281
Coord C2 exon
chr4:163201975-163202073
Length
12208 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTTCTCTTTGTTTCCTGCAGAGA
3' ss Score
12.06
Exon sequences
Seq C1 exon
GGTCTGAAAAAGCCAGATATTTTAATAACGGTTCACGGATCGCTTAGCCAGAAAACACATGCAATTTTCCCTCAGCCAGACTAACTTGGCATTCTGAATACAGGCTCAGAGGGGAGGGGCTGGGCCTCTCCACGCAGGAACTGGAGTCAGAGGCTTCCCTTGCTGCCTGCAGGGAGAGACCATTAAGAATGCCTCTCAGTGCCTGGTTTCCTGAGGTATCTGAGAGTAGACAGGCGACCTCGAGGAATCTGAGCACATCTCACCGGCATTTCTGCAGGAATCAGGATGCAGGCCAAATACAGCAGCACAAGGGACATGCTCGATGACGATGACACCACCATAAGCCTGTATTCTGGAACATCCACTGTCACCAGACGAGCAGAGCCCAGGCACTCAG
Seq A exon
GTACTTACTTCTGTCTCCTCGAATCCAAGCAGATCAGAGCCCTGGAGAAATTCGTGCGATGAGACACTTTTTATAGGCATGTGCAAGGCAGAGGGAAGGGAGGGCATCTTCCCGTGGCTTATAGTGAGGGGTAACTGCACTTTCCACAACTTGTCTACACACATGTAACATTTGGAAAAATGGAACCAGCATACACACAGGGGTCTGATTCCTTAACACTGCATTGCTGGCATAGCAGTTTGCAAGGAGGGGATATGAGCTTTCCAATTAGGTACAGCAGGGAAAGAAGAAATGGTTTATACCTTAAAGTAACATTGTTTCCTTTTCCTTTCTCACGAAGGCCAACTCAGGCCAGCTTGTTGTTGTCCGTGTGGACTGACACCTGTGATGGGATTTGGAAATTTGGGGTAATAAAAACGACCAATTCATATTTTGTCAGTTTTGAACTCTTGACACTAAGGGAGAGATGGTATCCCAGGAGGCTAATTAACTTGGGTATTCGTTAGAATCTCTGCATCTTGAATCTGCAAGATCTTGGAGGAGCCATGTCAGAATCAGGTATTGGTTTTACCCTCTGACAAGGACTTTGGAAGTAAATCCTAATTTCCCCTTAGGTGTGAATTTCTGTGAATTGGAGCTGAGATAGAACCTAGGGTTTTCCTCTGGTAGGAAACAGCATAAAACTGAGCTATGCTGTAGACTTGGTTTAATTCAGTGGGAGACAGTAAGTTGCTTGCTGGCCTCAAACCTTCCTATCGCTGTCTCCTCGGTAACTGAATTATAAGGAGGCACCACCATACCATGTTCTGTCCTCCTTTATTCCACTGATTTTAAAAACATTGAAATGGGGGTTGGGGATTTAACTCAGTGGTAGAGCACTTACCTAGCAAGAGTAAGGCCCTGGGTTGGGTCCCCAGCTCCGGAAAAAAAGAAATAAAAAACATTGAAATGATTGAATCATACTTGAAAGATATTTAATTTAGCCGATGCCTTACCATTTTTGTTACCGTTATTTATCTTACAATTGGGTAGAATTTTCCAGTTCTACTCATTTTCATAATCCACACATAGAAAGGGGAGCTTATCTGATTGGTCTACAGCAGACATTAGATTTGGCTCTAGGGCAAAGACCCCACTCGATAAAGAAGATCACATGTTGCATGTTCACATTCTGGTATCAAGTGGGCCACTTACCACAGCATGACCTTAGTGTCCTGGGGCTTGGTGCCATTTCTTATAAAACATCAGTGACGGGAGGTGTGCATTGGTGCACACGTTGTGACCACTTTAAGTGCTGGGTGCACGTTTGTCCATACTGACTTCAGCTGACAGTAAACAGGAGTAACAAAAACCCCTTTCCTCCAGAAAGCAATTCCACACATTTCTGACTGTCTATCTGAGGCTTACTGATACTGTTTCTTGTTTTCCCACTAAACTACCCAGAGAGCGGTTTAAAGGATATTGGGGATTTCCAGCTTCCTTCACCTGAACTCAGTGGCTGCAGGACGAAGGATAGATGGGGCAGGAAGTGCGCAAAACAATTGGATTGTCCTTCCTCCAGCCAACCTCATGAACAACCAGCCCCAGGACCTTAGTTCCAAGAGGACAGCATGCAATTTCGTTTTTTTTTCACCTTTGCCTAGAGAAGGGCTAGTGATCTGCATAAGCAGGAACAGTGTGTCCAAATAAGTACCCCTGAGATCGAAGGGTGGAGACAGAGGTGGGGCAAGATGAAACACTTGGTACAACACTTGGCAGCTTCTTTGTAAGAAATGGAAATTGGAACAGTGGGAGGGAAGGTTACAAGGAAGTGACTCAGAGGCTAACATCTGGAAAAGGTTTCCTCAGCCTCCCTGTGTGATATCTCCCTTTCTTCTTGGGATACGCAAACATTTAGATGAATGTCGTAAAATTTTTTTGTAAGAAAACATTTTTTACACACCTCTGCTGTAGAAGTAGCAGTAGAAATCAGGGCAATTTCAGATTCAATATGATGTGACAAAATACAAGTCGGTGTTTTTTTTTTTTTACCTGTTTCTTTTGAACTGTTAGAAATGAATAATACCACAGGAGATTTTTGAGATTTTTTTTAATGTTATTCATATAACAATTGTGCTTATTTAAAAATACAAAACAGTTATGAAGACAGAACGTCAAAAATAAAATAAACAACTGTACACCCAATTTCCACACATTCAGAGTAGGACCTGGCACACAGTGCCAAACATGGCAGACCATCTGCTATGAGCTATGAGGGAACCAGATTCCCAACTCAGCTCTCTATATAATAACATACTACCTTGGAGCACGTGCAAGCACATTAAAGCCTGGCCATCTGTGTCTTGGGGGCTAAAGGAGACCCAGAAAGAACTGGAGAGAGTGGCCCTTGCATTGAGTTGATTTTAGGATTTCCCATATTATAAAGAACTAGGAGTGGTAGTGTCCAGGGCTGAGGAGACTCTCCAGAGAGACTTACAAGAAGAAAGCGAAGGGGATTTTAAGGAACTCTGCATTTTCAGAGAATTCTTTGCAATAAGTATGGCTGAGGCACAGAGCTGAGCGGTGGCTATGCAGTGCGGGTCTGGAGCGCTAAGAAAGGTCTCTTGGGCTCCCTGGAGCGTTTTAGGTCTGTTCTAAATGAGAGTAATGAAGAAAAGAAAAATACAGGGAGAGAAATGACTTGAGTTAGAAGCATCTCTAGGCTATCCTGATGATGGACTGAAGGAGAATCCACAGACCTGGATGAGTCAATGTCCTGTTTTATCTCTAGTCCAGGAACTTCCTCAACTGAGGAAGAAAACTAAGAAGGAAGAGTAGATGGTGATGGGAAGTTGAGGGGAAGGAGCTTCATGGATTGCTTCAGGTCGTTAGTGAGCAGATAGGTAATTTGAGTCCAAGGTTGACTGAATACTCAGATATGCTGTAGGTGCTGCTATCAAGGGTTGCATAGAAGGTGCTGTCATGCCTGCAGGAAAGAATCATAATGGTGACAAATTCAGGCATGAAGTCCAAGGGTCTGGGAGGTGAGACGCATTTGGAGCTGTCTAAAGACACATATATTTTAAGGATCTGTGTTAAAGGTTAGAATTTTTGGCTAATATATAGATGTAGTAAGAATCTGGGATCAGGGTAAGAATTTTGGGCTGGATACCAATGTATTAACCATACGTGAATACAGGATAAATGAATAAACCATTTAAATAATATGCATAAAAATTTACATGGAGTGAATAAGGATCACTGAGGGAGGGATGTATATATAAGAGCCAGAAACATACAATTAAAATCAGCCTGACAAGGACACAATCCAGGGAATACCAGTCCTAGCCTGGAGGACATGATGGCCCAATCAGAGGCTTCACAGAAACGGCACAGCAGAGAACATGGAAGCGGACTTGGGTATTAAGAGGTCATGCTGGAACACTGGGAGAGTAAACCTCAAAATAATGGGAAAACACATGAGTTGAAGGCAAGATGTGGAATGCTAAAAATAGCGTTACGCGCAGAATATGGAAGAGGAGGCTCTAAACACAGCTTATTATTTCAAGAATACAGAGAAAATAAGAAGTTTATTTACTCATATCATCCATCATGCAATCATTCATCATCCATCATGCATAACATAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATGAAAAGGGCTTTGAAATTTCTTCTAAATAGGAGTGTGAGCTGTCTATTGACGACGATTGTTAGAAACATGATCACATTTAAAATGTAAAATAAAACTGCACCGCACAGACCTCCCTCTCCTGAAATTTGACATATTTTTCTTACTCCGTGTATAGTTCAGGAGCATAGGCAACCATTACTTCTTAAATGACAAGCTAACTTTCCTGCTTCACGTGTGGCAATAGCAGCTAGCTCCTAACATTGTGCCTAGAATATATAATACGAGGATCTCTTCTGAAGAAAGGGGGATTTCCTACTTTGATTTTATTAAAAGTAGATTTTTCCTCCACACGATATTTCGATTACGATTTCATCCCAACCCCAGCTCTGCTGAGATCCTCCTTACCCTTCTGTCCCATCAAGATGTCTATACCTTCCTCGTGTCTTTAATTAGAAAACAAGCTGAATCTAAATAATAATGATAATTAAAATAAGAAAAAACAAAAATCAAACAGATTGAATAGGACAATAAAGAAAAGCAGCCAAACAAAAAGCAGAAAAGGATCATGTCAATTACACAGCACAGCCACGCACAGACACACAGCACACAGACACCACACCACAAGTAACACAGACACATCACACACACAGCACAGACACACGAACACAGACACACACAAACACAGCCAAGCCACACACACACGAGCACAGGACGACAGCAGCACACACACACAGAACACAGACACACAACACACACACACCCAGACACACAGACACACAGAACACACACACACACAGACACACACACACACAGACACACCACACACAGACACACACAAACACACACAACACACAGACACACAGACACACAGACACACACACACACAGACACACACACACAACACACAAACACACACAACCACAGACACACAGACACACAGACCCACACACAACCACAGACAACAGACACACACAAACACCCACACCCACAGACACACAGACACACAGACACACACAAACACACCCACCCAGACACACACACACAGACCACACACACACACAGACACACACAAACACACACACCCACAGACACACAGACACACGACACAACACCCACAGACACACAGACACACAGACACACCAAACACACCCACACCCACAGACAAACAGACACACAGACACACACACAACACACCACACAGACACACACACACACACACACACACACACCAAGGAAAGCACAGAACTGGAGAAGCTGTAATCCACATGGAAAGGACTTGTAAGCTAAATAATAATAACAGTAAAATTAAATTAATAAATTAATGCCCTGACTAAAACTTATGGACAAAGAAACCCAAAGTTGCTATTGAGTTCGTTTTGTGTTTGTTATTTACTGCTGGGCATGGGGCCTGCTATTAAGAGTGGTTTGTTGCCTCAACGAGATTCCACTGGGGAAAATTAATTTTTCATTTGCAAGTGGTTGTCAACTGGAGGCAGCTTCCATGTTATGGATAGGGGCTTGTATTCGCTTTCTATCTCGGTGCTGAAATCCCAGCTGACGCAGACCTATGCAGGGCCTGTGCCCGTTGCCACAGTCTATGAGTTGATACATGCACCGTTTCAACTGTGTTTAGAAATCCATGTTTTTCAGTGGTCTCCATCCCCTCAGGCATTTACATTCTCTCTCACTCCGCTGCTCTTCTGGAAGAGTCCCTGACCCCGAGAGGGAGGATTTGATGTAGGCATCCCATTTATGACTGAGACTCCTAAGGTTTCACTCTCTGCACATTGGCTGTGGGTTTCTGTTCCCATCTGTTACAGGACGGAATGTCTCTGATGATGACTGAGCAAGGCACACATCACACATCTAACAGAAGTCATTAAGAGTCATTTTATTGTTATGTCCCTTTAGCAGAACTGTCGTATTTAGTTTTCCCTTAGATTTATGGTCAATCTAGTCTCAGGTTCTGAGCCATCCGAGCATTGTTGGGTGTGGGTTCCATTTCATGAAGTGAACCTTAAATCTAATTAGATATTAAATCTAATTAGATATTGTGGTAATTACTACCACAACTTCTCGCCATTATTGCTTTAGTAAATCTTGAATGAAGGCCATCACTGCAGATCAGAGGGTTTATAGCTGGACAATTGGTCCTTATCTTTCTTCTTTGGTAGAGTGTAGAGTACATTTCAGCTCTGCAAACACTAATTAGTAATGATGAAGGCTTTAAATAGGCAGCAGCCCCAAATCGTATGTTCAATGAGTTGTATGGGCATTGTCTTCAGTGATAGGGCCTTACTATCAGTTTGAGAAGAGAAACTGATAATGTTGGCAGTAGCCTGGGTTATTTGAAGTACCCACAGGGTGAATAACTCTATTAGATGCGACCCATCCCTGGTACTGGAAGCTTCATTTGATGACTAGAGATATCTAGTTGGAGCCCCATCTCCTCGTTTATTTGGAGACTTTATATGTGCATATTTATAAGAAGCTTCTACTGTATTTGGTTTTCATGTGGCCCATCAAAATGGCCTTAGTTTTAGCTTTTTCTGTTACAGTAGTCTCTTCTCCCTCCCCTCTTCTCAGTCTATCCCTTTAATCCTCTGAATCAGTCCCCCAGACTTGTCATCAATAACCTATTCTATTTCCCCTCCCTAGAGAGACTCATTCTCCTGATCCAGTCCCTTAGCCTACATTTAACTTCTATGGTGTAGATAATTGTGCTTGCTTATCTAAAACCTTAACAGCTAACATCTACCTACAGTTAAATATACTACCATATGTATTTTTTTCTAGTCTGGGTTACCCAATTAGATATTTTTAGTTTATCCATTTATTTGCAAATATTATTCTTTCTTTAAAAAAAACTGATCACATTCTATATTCCATTGTGTAAAGTGTGCCACATTTTCGTATCCATTTACCCATCAACAGACATATAGGTATTTTTCAATTTTGTGGATATAAAAAAAAAAAAAAGAAGAAAAAAATATAAATAAACAAAAAAAAAAAAAAAAAAGAATATGGATGAAGCAGCAATGAACATAGTTGAGCAAGTGTCTCTGTGGTAGGATGAAGCATCTTTTATGTGTATGCTCAAGAGTAGTGTAGCTGGATCTTAAGGTAGGTCTATTCCCAACTTCCTGAGGAACTGCCATACTGAGTTTACAAAGGCTGTTCATGTTTGCCCTCCTGCCAGCAGTGGGTGAATGTTCCCTTTACCCTACATTCTTGCCGGCATGAACTATTATTTGCTTTATTAATCTTGGACATTCCTACTGTTTATGAAGAGATCTCAAGATAGTTTCGACTTGTACTTCCCTAATAACTAAAGCTATTGAGTATTCCTTTGAGTGTTTCTCAGCCATTTGTGTATCTTCTTTTGAGAATTTTACATTTAGCTCTGTACCCCATTTTTAAATTGAAGTATCTGTTTTCTTAATGACTGGGTTTTGAGTACTTTATATTATTTGAATATTATCCCTCTATTGAATGTGTAGTTGGTAAAATGATAGTATTATTTGCCACGCAGAAGCTTTTCAATTTCATGAGGTCCTGATTATTAATTGTTCATCTTATTAATTGTGATAAAGGTGTTCTATTCAGAAAGTCTTTTCTTGTGACAATGAGCTCAAGATTATTCCCTAATTTATCTTCTATCAGATTGAGTGTATCTGGCCTTTTGTTGAGGTCTTTGATCCACTTGGAGTGAAGTTGATTTTTGTGCAGAGTGATAAGCATGGATCTATTTGGATTCTTCTATATGCCACAGTCCAATTTGATTAGCATCAGTTGTTGAAGGTGCTGTCTCTTTTTTTCACTGTGTATTCCTGGCTTTATCATAAAAAAATCAGGTGTTCATGGATGTGTCAGTTTATGTCTGTATTCTTGACTAAATTCCATTGATTAATGTGTTTGTTTTATGCCAAAATCATATCACTTTTACTCCTACAGCTCTGTACTACAGCTTGAGAGCTCTCCTGGGCTTTTTGTATTTCCATATGTAGCTTAAAATTGTCCTTCAAATTCTGTGAAGAATTTTGTTGGAATTCTGATAGGGATTTCATTAAAACTGTAATTGCTTTTGCTAAAATTGTCACTTTTACTATAATAATCTTACTGGTCATTGGAGAGCTTTCTATCTTCTGATATCTTACTCAAGTTTTTTCTACAATGTTTTAAAGTTTTTATTTTACAAGGATTTTTTTTGGGGGGGGCTAGAGTTACCACAATATGTTTTATATTTTTTGAGTCTACTGTGAAAGTTACTCTTTCCCTGATTTCTTTTTCAGTCTGTCTTTCTTTTGTATACAGGAAAGCTACTAGGTTTATGTATCAATTTTATATCTTGCTCCATTGATAAAAGTGTTTGTCAGCGGTAAAAGTTTGCTGGTTGTAGTTTTATGGTCACTTACGTATACTATCATACTATCTGCATAAAGACGCACAGGCCTTTTCCCTTTTTATTGGTGTTCTATTGATCTTTTGCATTTGTCTTAGTGCAGTACTGTGTCAAATTGATATGGAGAGTGGACAACTTTGTCTTGTTTTTTGTTTTAGTGGAAATGCTATGGATTTTTCTCTCTATTTGGGTAGATATTGGCTGTGGACTTGCTATAAATTGCCTCTATTATTTTGAGGTTTATTTCTTTTATGCCTCCCCTAGTCTTTCCATGACTATTATCATGAAGGGCTGTTGAATGTCATCAGAGGCCTTTCTGCATCTAATGCAATGATATTGTGGGTTTTCTTTCATATGGTGGATTACATTTATTGATTTATGTATATTGAACCATCCCTGTGCCTCTGGAATGAAGTCTACTTCATCATGGTGGATGATCTTTTTAATGTGTTCTTAGATTCCATTTGTAAGTATTTTACTGATAACTTTTGTAGCTATGCTCATTGGGTAATTGGTCTGTAATTCTCATTCTTTGTTGAGTCTGTATGGGGTTTATATGTCAGAGCAACTATGGCTTTATAAAAAGAATTTGACAGTGTTCCTTCTGTTTCTATTTTGTAGAATAATTAAGAAATATTGGAGTGAAATCTCCTTTGAAAGTTGGTAAAATTCCATGCTTTCTGGCTCTGGCCTTTTTATGGTGAATGCTCCTATTTCACTAGAAGTTATAGGTCTGTAGGTCTGTTCTCATTGCTTATCTGGTCTTTATTTTACATTGGTGCAGAACATTGTCCATTTCTTTTGGATTTTCTAATGGAATGAAGTACACATTGTTAAAGTATGTCTCTGTAATTCTCTGGATCCCCTTGGTATCTTTTGTTATGCCCTCATTTTGTTTCTAATTTTGTTACTTGTCTTTTCATCCATAGAGTTCAGTTAATTTAGGTAAGGGTTCGTCATTCTTATTGGTTTTCTCAAGGAAGTAACTCTTTGTTTCATTGAATTTTAAAATCTTTTTTCATTTCTATATTATTAATTTCATCCTGTGTTTAATTATTTCTTGTCATCTACTCCTTTGGGGTGTTTTTCCTTGTTTTTGTTCTAGAGCTTTCAGGCATGTTACTAACTTACTGATATGAGATTTCTCCAAGTTTTTTTTAATGTGGGCATTTAGTACTATTGCTTGCCTCTTAGAACCACCCTCATATTTCCCATAAGTTTGCATATGTTGTATTTTCATTTTCATTCAATTCTAAAGTGCTTTTAATTTCTGTGTTGATATATTTTTCATTCAGTAGTGAGTTGTTCAGTTTCCATTAGTTTGTAAGGTTTTTAATGTTTCTGTTGTTATTTATATCTAGCTTTAATCTATGGTGCTCTGATAGGATGCAGAGTGTTGTTTCAATTTTCTTCTCTCTTTGAGCCTTGCTTTGGGCCCCAATATGTGGTCAATTTTGGAGAAAGTTCCATGAGCTACAGAAAAGAAGCTATTCTTTTGTGTTTAGGTGAAAAGTTCAGAGATATCTGTTAGATCCATTTTGTTTATTACACTATTTAGTACCAGCATTTCTCTATTTAGTTTTGTCTGGATGACCTGTCTATTGGTGAGAGTGAGTTCTCCTACTATCAATGTATAAAGATCAATGTGTAGGGGCCAAGGAAGGAAAGACTTTGTTGATGGTCTGCTACTGAACCAGGGATAAGATTGGTGGTGGGAATTGGAGTACAGAGGAGAGAGTGAAGATGGTCTGCCTAATTCCCTAAAACCCTTGTGGGCTTCCAGTGATTTGGAAGTGAAGTTTTATGCTTGTTCTTTCTGGTTCAGAACCTAACTTGCCTTCTCAATTAAATGGAATACAGAGAGAAGAAGGTACAGGTTCTACTCTCCTTTTATTCTGTCACAAACTCCAGATATTATCTGCACTGAGAACAACTCAACTCTGTCGGTTGGCTTTGGTCATAACCCAAATAGATGATCTCACCAGGAGATGGGTCTCCTCCTGACACAGTCTAATGAGATAGGTCAAACCATGGAAACAAAGTCAAGAAGAAGATACTGTCTGTATTGTTTCATTCTATGTTTTATTTTATTATTTGACTGGTGTGAAGCTTGATTTTATTTTACACTCATCTCTGAGAAATTGACAGTCATATTCCTTTATAATTTAGTTTGGAGAAGACATAAATCTAGTAAATGAATATGTAACACTTTTAGAAATTACGACTTTCATGCAGGAGACTCCAAAAAGAAGCAGTAAAACCATCATTTCTGATGATAAACATATTTGTTTTCCTAAAGACACATACGTGGAGCTCAGTGGGCAGAGTCTATTTTACAAAAGTAAGAACAAATGAATTGATGATGTAAGAAGTTGCTGGTTGGTAAGGTTTGAGATTCTTGGGGTTTTGGTTTGGCTTTTTGTTTGTGTCAACACTGGTTGGTCTCTATCTCTCTAATGCAGTTAGAAATGACCTTGAGCTTCTGATCGCTACCTTTACCTATGCTACTGGGGTTATAGGTGCTTCATGCCTAGCTTCATATCAGGCAAATGTAACAATTTTCCCAGTAGTCATTTTTGTTGTTGGTAGTTTTTTGGATTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCACAATGCAAACCTGACTCGGCCTGAAACTTTCTATGTAGACCAGTCTGGCCTTTAACCCATAGAGAACTTCCTGCTTCTGCTTTCTCACTGCTGAGACTAAAGGTGTGTACACTTGACCTCCACAGTCAGAATCTTGACAAGCATAAGATTCTAAACACAGCCATTTAAATGCCGTGGTAAAAACTAATGTGGGCCCTGAGAATAGGACAGAAATGTCAGGGCTTGTTAATGGACTAGATGTACAAAGTGAGGTTAAGAGGGTTTTGTGTCCAAGTCTCTAAAGACAGAGGGAAAAGTCCTGCCTGCCTTAATTTTGCATCTAAAAGGTTCTCCAACCTCTGTACCTAATGGCAACTGACTTTAATCCAAGGGAAAGAAAAGGCTACTACCCATATTTTCTCTTTGTTTCCTGCAG
Seq C2 exon
AGAATGGGACACCCTCTTCAGTTTGGCGCCCAGTGGCCCTGACCCTGCTGACCTTGTGTTTGGTGTTGCTCGTTGGCCTGGCAGCCCTGGGCCTTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060460:ENSRNOT00000091602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF043759=HemX=PU(10.7=39.5)
A:
NA
C2:
PF043759=HemX=FE(23.6=100),PF041569=IncA=PU(29.4=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]