HsaINT0036185 @ hg38
Intron Retention
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1 member A [Source:HGNC Symbol;Acc:HGNC:24355]
Coordinates
chr12:10089124-10098985:-
Coord C1 exon
chr12:10098808-10098985
Coord A exon
chr12:10089223-10098807
Coord C2 exon
chr12:10089124-10089222
Length
9585 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TTCTCTTCTGTTCCCTGCAGAGC
3' ss Score
12.12
Exon sequences
Seq C1 exon
ACAGTAGCCCGGCGGCCCAGGGCAATCCGACCACATTTCACTCTCACCGCTGTAGGAATCCAGATGCAGGCCAAGTACAGCAGCACGAGGGACATGCTGGATGATGATGGGGACACCACCATGAGCCTGCATTCTCAAGGCTCTGCCACAACTCGGCATCCAGAGCCCCGGCGCACAG
Seq A exon
GTACCCTGTCTCCTGGAGTCCAAATAGACCACAGTCCTTGTGAAATGTGTGAGATGATCTATCCCTCCTAGAAATGGAGATATTTAGCTTGCATCTTATAATTTTATTTCCAATTACTCGCCCTGTGACATAGTAGTGATTTTTTTTTTTCAGTTATATTCAGTTCCATAATTCCCACACTTAGAGAAGGATTTTATTTCCTGGGCCACTCAGCCAATCTAAAGCTAAAATATGACTTCAGTTCTAGTGAAAAGGACTCACATGGTAATATACACAGGACTAGGTTCTAGGTCCTAAACCAGGTATGCCACTTTCCTTCTGTGTAACTTTGGATGAGTTGTTTAAGTATCCTGGTAGCATCATATTCTTTATTTATAAAATATTAACGGCCACAAACATGTATAAAGGGCTCATTATGTGCTGGCAGTGTTTTAAATACTTTAAGTATATTAATTCATATTAACTTGACTTAATATTAAATAGAAGTAATAAAACTTCCTTTACAAGGTGGTTGTGAGTACTGAGAATGATAAATTATGTAAAATATTTGAATGTCTGTCTGATCTGATATAGACTGACACAAAATTGCTGAAAGGAACACTTTAGGTTCTTAAGAAATGGAATGTTGAAAGGAATCCCACATTTTAACATTCATTCAGTGCCTGTGTTTTAATATGCCCTTTCCCTTCTGATTATATCATTGTTTTCTTCACCTTTGTAAATCTGGATATACCTTTAAAAAAAAAAAACTATCCTGTTCCTTATTTCTTTATCAAATAACTTTTAGTTTTCCTTCCTTTCTCCTACTAAACCCTCCATTCACTTTCTATTTATTTCTATTTATTAAATGACCCTCCACCTGAAACCTACTAATATGGCTTTTTTTTTTTTTAACTAAACTACCCAGTAAGCTGTTAAGGGACATTGGGGATTTCCAACCTCTTTGAAATGAAGCTAAGTGACAAAAGTAGGGATGTCAGCTTTTGTAGCCACAGGATATGTGTAATAGGATACAAAGCGTTTTCCTCCAAAAAAACTTACGAAGAGTCCATTTTTACGGCTGTGGTTTTGAGTAGCTTGTATATAACTTCATTTTCCACCTTTGACTGGAGCCAGGAACTCTGTCAAGGACTAGAGATCAGCATAATTAAGAACAGCATGTACAAATAAGTTCTGCTGAGGTTGAAGGGTGGAGAGGGAGGTGGAGCAAGATAAAACACTAGCTGCAACATCTGGGAGCTTCTTTGTAAGAAATGGATATTGAAACAGTAGAAGTGGAGATTACAAAGAATTGTCTTGGAAGAAATCATCTGGAAATAGTTATCTTAGGCAACATATATGAGATCTTGTTTTCATCTTTTTATGGTAATACAAACATTTAGGGGAATACCATCATAGAAGTATAATTATTTCTTAGATAAACATATCTGATATACCTTCGCTGATAAAAATAACAGCAGAAATCACTCAGAAATTTTCGGCAATGTGGAGGATTCAGATTCAACATAATGATGTGATACCATTAAGAGCTGGCAACTTTTATTTTTTAGAATTAATAAAAATAAATCACACACACATTCATTTAATTTCTAGACTTTTGTCAATAACAATTGACGTAACAACTATGTTTGTGTTTAAAAATGCCAAACAATTAAGATAGTAAAAATGCCAAACAATTAAGATAGTGAAAATGAAAAACAACAACCTCATACATTTTTCACAAACTTATGTTTGGGGTCATGTTATCCTAGTACTGAGGATATAATGTCCAATGTGATATGGTCCCTGTTCATAAGGAAATTGAAAGTCTAATACAATTCTCAACTAAGGAGTAAGTATAATAAGGTGTTATGGCAGAAGCATGTACAGTACAGCCGAGAGCTTAACCAAGCTCTCGGCTTAATTTTTACCTAATTAAGTAGAGGAGTTCAGGAAAGGCTTAACAGAAGGAGCAACTGTGGAGTTGAGTTAATTTTAACATCTTCCACATAATAAGGAATCGGGAGTGAGGGTGTTTGAGAGGCTGGGGACACTATAGACAGAGAGACGTATGAAGGGAAAGTCATGAAGGTTTTCAGTAGCTTTGTATTTTTAGAGAACTATAAGCAATATGTATGGCGTAGGTGTAGAGTTGGAGGAGGGAAACTTAGCAAAGGGGTAAGTCTGGCAAGTTAAGGAGGGATTTTAGGGCATGCTGATCTAGTTTAATTCTATTCAATAGTTAAAATGAAGTCAATGCAGGATTTAGATAGGGAGAAACAAAATTTTGCATTTTGGAAAGACCTTCCTGGCTGCAATGGAAATGATAAGTTGAAGGTATATGAAACTGCATGTGCTGATACCAAATTTTTCCACTAGTCCAGTACAAGGGTAGAAAAACCTGAACTGAGGCAGTATAGTAAAAATAAGGAAAAAGAATCAGATATGAAAGATGTCGAGGTGTTGGAGTTTAGATAATCGGTGATTGGTTACATGTGAGGAGACAAGGAAAGGGACTTCGGTGGTAGGTTGACTAGGTTCTGTTTGATGTAATGTAGATGGTGCTGATGTTAACTGAGACAGAAACTATAGAAGGGACAGGAAAGATGATGAATTGAGTTTGAGTTTAAGGGGTCTGCAGAAGGAGGGACATGCATTTGGAGCTGTCCAAAGACACCCGTATATGCAGGATGTGGGTTGGGCTACATAGACATGTGGGAATTACTGGCATAGTAATTAAATAAATAAAGTAAATGAGGTACCTAAGTCATTAAGTCAAATAAATGGCTAGTAACTAAAATGTATGAGAGTGAGTGAGATCACTGAGGGAAGGAATGTAAAATGAAAACATGAATGAACAGAAGAGAGTGTCAAGGAGATAATCTGAGGGAATATCAACACCTGAGGAGCAAGAAGAATGAAAGATTCCAAAAGGAGCTACCAGGGATGAATAGCAGAGAGTGGTAGAAGCAGGAGTCTTGGAGAGAGACAACAAGGGCATCAAGAGACAATAAATTCAAGAGTAATGGAAAATTAGAGTAATGGAAGGACAATAAATTCAAGAGTTTTAGAAAAGTCAATGATAATGACTGTGAGTTTTAAAAACAACAAATAACAAATACTGCAGAGAGTTTAAGCGAAAGGAAGACTAAAATGATTATTTAACAATTTATCAATAAGGAGGAAAATATTTAGTTTTGACAGCAGTGGTTTGAAAAGGAACTGATGGTTACATAATAAAATAAACAATTTAAGTCATTTTCTCTTTTTCTTTCTCTCTTTTTTTTTGAAGATAAAATGGGTTATTGCTGAGGTATTACAGCATTGGGTGACAGATTTTAAGAATGATTTTTTAAGATGTGGGAAATTCTAACTCAATTGTAGATTGAAAATAAGTTCAGGGAGAGAACTTCACATTAACAGTACAGTAAGAGGAGAGAGGATGAAATAACTGACAGGCTGAGATTCCTGCCAGAGACTAAATTTTATCCTATCAAAAGAATATGAAAAATTACTTTGGTTAAATAATTTTAAAAAATTTAATAATAAATTCAAGTTCCTCTTTTCCCTTGTTCACATTAATTACAGTACTATTGAATTTCCCAGCGTTTTAGTTTTATTTCCTCAATTACAGCATAAATCCCTCATCACAGTCATGACATAAATCGCTGTTAACTGATTCAACAACTCTTTAAATCAAACCTACTAATGACAAGACATTATGGGATGTACTAGAGGAGCCTCTTTTTCAGGTGCTTAGAGAAGTGGAAGGAATACTCTAAATCAATAGTTGTAGTAAATGTCATTTAGTGCTATTAAATCAATGTTGGAGGCCGCAGAAGCAATATAGGAATGAATGAGTTACTGATTGAGTTTAGTTTTGCGAGTTCCCAGAGGAAGTGACATGATCTGGACCCATGAGGCTAAGAAGTAAAATGGGATCCTATTAGGAGGAGCCTGATACAGTACACTAAGAAACTGACTAAAACAGAAAGAGCCTTGGGAAACTTCTTCCTATGGAAGAGAGGAAGTATGATTAAATTTATGCTTTCAGAATTCATCTTGCTGGCAGAGTGGACATTTCATAATGTAGAAGGGAAAAGTTGCAAGCTGCTGTCATTCTATGATTCCAGATGCACTGCCATGTATAAATATTGATCTGAGATGTGTTGGGAGGATAGGAAGATGATTGAAAATGTCCAGCTCTGGAATCAGTCAGCTTGGGTAGCTCTGTGCAACTTAGTGACTTAGGCAACTTAAGTGACTCCTTGGTAATTCAATTTTTGTAAAGGTTGCTTCCAGTGAAATAATGTGTATCTAGAACACACTTATGGTTACTATTAATAACTATTTCTCTCTCTCTCTTTTTCAATACTCTCCATCCAATCATTCTATATAAAGACATGGAGAAACACAATCCTGGGGAGTTACTAATAGTTCATTAGTAACTATTGCTAATAGTAGCTGTGTGTTCCTGAATAAGCTGTCTAAACCTGCTAGGCCTCAGTTCCCTACCTGTAAAATGAGATAATAATATCTACCTTATAGGGGGTGTTTGTGAGGCTAGATGAGAACATTCATATAAGACATTTTTCTCAGTAACTCAAGAAATTTGAGCAATTATCATTAATGGTAATGTTGTTTTTGAATTATATTTCAGTAAATAATATCTGTTGATGGGGATATAAAATTGAGTCACCTAACTTTTACTGAAGATGAAAAATATAATTAAATTTCTAAATACTGTGAATTAGAACCTCAATGATATTCTAGAAATAGCTCATATGTTTTTAGATGTATACTCTTTTCAAATAATAGGAAGGATAACACAGATTTTCATTTAGAGAGTATGAAAATAGCAATATTTGAAATAGATTCATAAGAGAAAAGAAACCTGCATTTACATGAACACAGAAAAGCAGACTCAACCCGTGAACTCAGATTCCCATGAGGAAGTTTCCTATGTGCCATATGTGAGGATTAAGGAAACAAAGACGTTTACATTTCAAAATACAAAGGGATGAAAAAGTGCTTTCTGAAATATTATGTACATTGCCACCAGTTTTGCCCCCATGTCTCTGTGATTCCTGACTGGCTCATGGAAAAGTGTGCAGAGTATAGCGTTAAACATAATTTAATCCTAGCTCTGCAACTAGTTTGTAACATGCACATTATTTAAACTCTCGGTGTCTTCTCCAGCTTTTAAGACCTTTTGCATTTCATAGGTATACTAATAGACTGTATATGGTAATGTCAGCTTAGTTTCTTGGGTGGAAAACAAAATTTTCCCTCTCTGATGCCTGATGAAGGGTAACTGGTTAAGTCTGACAACTCTCCACCCACAAAGTTTCATATAATTACACAGTAATTGGTATCCAAAATTTGACCCTAGCACTAAGGCCTTTTATAGTATGGTTAATACTAAGAGGATACAGGAAAGGTTTTTTTTTTTTTTCTATATATATCTTATTATTCCTAGGGATGTTTATATCATTCCTTGGCCTGTCCACACCCCTTTCTAAACATGCCTCAGGAGACAGCAAAGGGGTTCTCTTCCAAAAAATAAAACCACAATAAAGCCAAACCAAACTCAAGCGACCTCCTAGGCATCTTATTTTTGTGAAAATCTGTCTCATGTTAGGGTGAGGGTGATCCCTGGAGAGAGACTTCAGTATGATTAGGAGCACTTGGAATAAAACTGAGAAACATTAGACTCACAGTTAGAAGAAAAACATCTAGAAGGAAAAATAGTATCAAAGAAAAAGAAAAAGTGAAACTTTCAGTTTCATGGACTTTCCGTCATGGGAGCTTGGTTTCCTGGAAGATGAACTCCCTAGGATTGTGTTTCTCCATGTCTTTTATATAGAATGATTGGAAGGAGAATTTTGAAAAAGAGAGAGAGAGAAAGCGAGAGAGCAAGAGGGAGATGGGAAGAGAGAAGAAAAATTTCAAAATATGAAAATTTGATCAGAGAAAGAGGATTTCTTAGAAGAGATTTTTAAAAACTTTTTAAAGCCTGTTATACTTCTTTTATTTTTTCTGCCCTAGAGGCAATCTTAGGAAGGATCATGTATTTTTTTTCTTTTCATGAATATAATTATTATTGAAAGATGTTCTGATTTCTAAAGTCCAGGCCCTCACTTCACAGTAGGAATTTAAATTCACTCTTTTTGGTCCTTTGGGCAGAAAACAACAACTCCTATGTCCTCAATATTATGCGAGAGAAAGCAGATTTATTTTATTTTATCTTATTTTATTTCATTTCATTTCATTACTACTTTTGAGAGAAGATCTTGCTCTGTCACCCAGGCTGGAGTAGAGTGGCACGATCACGACTCACTGCAGCCTTGACCTCCCTGGCTCAAGCAATCCTCCCACCTCAGCCTTCTGAGTAGCTGCGACTACAGGTGTGTGCCACCATGGCTGATGAATTTTAAAAATTTTTTATAGAGATGGGGGTCTCACTATGTTGCTATCTTTTGTAGAGATGGGATCTCACTATGTTGCTCAGGCTGGTCTCGAACTCCTGGCCCAAAGCAATCCTCCTGCTTCAGTTGGGAGGATTCCAAAGTGATGAGATTACAGGCCTAAGCCACCGTGCCTGGCGGAAAACAGATTTATAAAGAGATAAATAAGTTGGTTGACTGTCATAGTTCTTCTCCTTTACTTCTTATTTTTAATTTCAGCCAGACAAATATTAATTATAAGAGGTCACAGGATTTAAAAAATTATTATGACTTTGAGATGCATATTAATGTAACTGTGTTTGAGTAAGGGTAGGCAGGCATATAACACAGGTATTTGTATATAATGGACCTATTCATTCATTTATTTAAATTTAATTGAGCTTATTTCAACTACTGCCCTAGGAATTGGGTTGCAATAATGGATAAATAAATATTTTCCAAGAAGGAGCTTAATTTTTCCTGGAGTAAGACACATATAAGCTAAATGAAATAACAAAGATATACAATATATTTAATGGTAATAAGAGGTATGTGGAAAAATAAAATCACCATGGTGGTGGGCTCACATAAGCACTTTTAACTATGGAATCTAGAAACATCCATATGATTAACTTTCTTGGACTGTATGGAAGTTTACAAATATAGGGTTTTGGAGAGGATGATTAACCCAAACTATATATTCTGCCTCTAATCTTTTTTTTTTTTTATGTTCTGCTGATCTGAAATACTTTTACAGTCAATACCACGAGAAAACCATCTTTTTCCAGAAAAACTAAGACTAAATCACATAGCTCAGTTAACTGAAGGAAACAGGAGGAAGCAAATCTCCCTTAGATTTGTTCATGATATAATCTCACAAAAGTCAATGTATAGAAACCAACATGGCTGGGAGATGTATTTAGCTGAGTCTGTTTTCTGCTGACATAGATGTTGCTGAAAATCAATAGCCTACAAAAAAAACAAAAACAAAAACCTGTAAACTTAACTTTGGAGAACCCACTTATCTCTTTAAAACTTAAATAGTTTAAGTCATATTAATTTTTTATTATTTCATTTTTTGATTATTTAAGCTGTCAAAGATTTACTCAGCCCTTATGTCCCAGGCACTACTTTCAGTAGTGGAAATGGACTGGTGGACAAGATAGACAAGATCATTGTTGTAATGGAATGTTAAATGGAGAGAAAGGAGACAGACAAAAAGAAACAAAAGTCATGAAAAGATTACCTAGTACAGGGTGAGTGATCTGCTAGAGATGGACTTACGGACCTCTTCCAAGGATGTGCCATTGAAACTGAAATTAATGCAGAGGCAGAAGTAGGGCTGATACAAGGTGCTTAGGGTCAAGCTTGATCAGATCAAGGACTAAACGGGAGACCGTTGTGAGGAGTACATGTGAGTGAGGGGAAAATAGTTCAGAAAGGCATGAAAGAGCTAAGGAAGGTCTCAATAAGACTAATGCAGGATTTAATTTTAAGTGCAATAAAGCTTTTGAAGTTTTTAAGTAGGGAAGTAGCATAATAAAATTGCCATTTTTTTTAAAAAAAGGAGCAATCTGTGAAAAGTGATTTGTATTTTATTCTAAATGTAATGAAAGCTACTTATGAAGGAGATGATTGCTAAGAAATAAGATTCACATTTAAAAATGTATCAGTATGTCTTCTCCGAGACTTTAACTTATTTTGCCTACTAGATTGTAAGTTCCAGAGGATAGTAATTATACTGTCTATTTCTATATTCTTTACTAGTTATCATTCCCCATTTGGAAATAACGTTTCATATAAATCTCTACCTAGAATTGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCGGGGTTAGAGGATCACTTGAGCTCAGGAGTTAGAGAACAGCCTGCAGCCTGGGCAACATGGTGAAACCTCATCTCCAACAAAAATATAGGAAAAAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTAGTTCCGGCTCCTCAGGAGCTGAGGTGGGAGGATTGCTTGAACCTTGGAGGCGGAGGTTGCAGTGAGCTGAGATCTCGCCACTGCACTCCAGCCTGGAAAATCTCTGTACCTAGAATGTATTATGTATAGGACCTTGCTAGAAGGAAAAGAATTTTCCTTTCAAAAAGCCCCTCCGATCTCTTTAATCTTTCTGTTTCAGAACGTGACTTGAATTCTCAGTGAAGTAGAACTAACGGGCTACAAAGAGATCACAGTTTGTTTGAGGGTTTCACTCTCTCTTTGTTTCATTTTTATCACAGTGCTAGATGCTACCTGCACCTGACTGAGACTCTTCCCTTCAGATATGTTAGGTCATTCAGATTCAGATAGGTGACCTCACTAGGTGAGGGGTCTACTCATGACTTACAGTAAAACCTCTGCAATTACTAGTCAAACTTATGGGAATGGAGGGCGAGGAAACCATGTTTGCCACAGTTTTAAAAATTATTTAACTGTTGCAAAAATAGTTTAGATTCATCTTTCTGAAATTGATTATCATGTTTCTTTATAATCTATTTTTGAAAAAATATAAATCAAATGAATGAATAAACAATATCCTTACAATAGCGGGACTTTCAATTAAGCAATTCCACAGAAAAACAGTAAAATTATTACTTCCCATTACTAACATGCAATTTGCCTTTTAGAAAAAGCATATACGGAACTTGGGGGAAGGGGGATGTTTTTCAAAAGTAACAACAAATTAATTTCATCTTTCCCCTGATTATGTAAAAAGTTGTCCCTTGGTAAGGTTCAGAGATTCTCAGGCTGTGTTTCAGACATTTTCGTGAGAGTCTTTCATAATTAGAATTTTGACAAGCAGAAGGTTGTACAAAGAACCACATAAAGATAATGGTAATGCATAGTGTGATTCAGTGCAAAGTAAGACTTGAGGGGTGGATACAAACGGGTGGGGCTTGTGAGAAAATCTAGCTGTGATAAGTGAGGCTTGCACTGAGCCTTATGATGATGTTTCTGAGGACAGAAAGCAGGTTATCCAGCCCCTGTTACCGTTGTCCAGCCTAATTTGTTCTTGTGCAGAATTAACTCCACTCCCTTACCTGTTATTGACTTAGATGCAAGAGGAAGAAAAAGCCAAACTCTGCTTTCTCTTCTGTTCCCTGCAG
Seq C2 exon
AGCACAGGGCTCCCTCTTCAACGTGGCGACCAGTGGCCCTGACCCTGCTGACTTTGTGCTTGGTGCTGCTGATAGGGCTGGCAGCCCTGGGGCTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048:ENST00000315330:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PU(30.6=87.2)
A:
NA
C2:
PF066977=DUF1191=FE(29.7=100),PF041569=IncA=PU(29.2=82.4),PF083915=Ly49=PU(28.6=82.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development