HsaINT0036418 @ hg38
Intron Retention
Gene
ENSG00000013441 | CLK1
Description
CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:200861702-200864699:-
Coord C1 exon
chr2:200864564-200864699
Coord A exon
chr2:200861863-200864563
Coord C2 exon
chr2:200861702-200861862
Length
2701 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
AAAACTTGCCTTTTATGTAGATG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTGTTTTCGAGACGAGTCTCGACGCAGCAGCTGTCAGCTCCATTTTGTTGTTGGTGCGCGACGCAGTCAGCTGCGTGATTCCCGTGATTGCGTTACAAGCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGACG
Seq A exon
GTAAGACGCAGGAGGGAGCGGACTAGGTGACAGGGCCGTTCCTGTGAGCCTCGCGGGCGCCTGGCGATGCCCCCTTTTCCTGCTTGTTTGCTGCCCGCCGTCCCCGGCGCGACGACTGCCTGCTCCCTTCACTCCCAGGCTGCACAGTGGCGGCGCGCCCCTCTTTCCTGCGCGGCCGAGCCTGTCGCCGCCGGATCCGGCCTGCGGGGGTAGTTACGGTGTTTGCTAGGCCGGCCGCCCTCTTGGAGCTTCTGCCCTCCGCTGAGGAAGCGGCGCCGCCTGACGCGGGACGGTCGGGCGGGCGCCATGTTGTGAACCGCCTCGGCGGAGCTGTAAGATGGCGGCTGGGCGGAGGCCGGCTTCGGCCCTGTGGCCGGAAAGGCGAGGCTCCCCGTTGAGGGGGGATTTGCTGGGGTTCCAGAATGTGCGTGAGCCAAGCAGCTGTGGGGAAACGTTGTCTGGAGTAAGTGGAGAAAGAGACGGAACCCGTAGGGGTTACAGTTAATGTCTAATGATGAAAGTGTCGGCGTAAACATCGCGAGTGGCTTTGTCCTCAGTGGTGTTAACAAAAACCAGATTTAGGAACCCAAGGAAAGAGAAATGCTGGGGTGTATTTGAAGGAGCGTTGTGACAGAAGTCAGGTGACCGAGAATTTTATGCGATGGCGTTTCAGCCACTCCTCTTGGGTTAGCAGTTGGAGCTTTTTTCTTTTCTTGGAGTCTCGCTCTGTCGCCCAGGCTAGAGTGTAGTGGCGCGATCTCGAGTCACTGCAGCCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCTTCAGCCTCCGGGATAGCTGGGATTACAGGCGCCCGCCACGACGCCGGGCTAATGTTTGTATTTTTAGTAGAGACAGAGTTTCACCATATTAAGCTGGCCTCAAACTGTTGACCTCAGGTGATCCATCCGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCAGCCTCCTTTTTTTCTTTTTTGAGACAAGGTCTCGCCCCTGTCGCCCCGGCCGGAGTGCAAGTGGCGCAATGACGGCTCACTGCAGCTTCGACATCTGGGCTCAGGTGATCTTCCCACCTCAGCCTCCTGAGTAGTTGGGACTACAGGCGCGCGCCACCACTCCTGGTTAATTTTTTATTTTTTATAGAGGCGGGGTCTCTCTATATTACCCTGGCTGGTCTCGAATTCCTGGGCTCAAGCAGCCCTCCTGCTTCGGCCTCCCAAAGTGCTGGGGTTACAGGCATAAGCCACGGCCCCCGACCCAATTGGAGGGCTTTAAAAATTATACTCAGGCTGGTCCAATGGTAGTGGGTTATCAGAACTTAATAGTTATTAGTGTCACGAAAATTAGTATACAACCCCTACCGCTAAATTTGACTGGCGTTAAAAAAAAAAGAATTGTAGCGGAAGACACAGAGGGGTCCCGCCGGTAAGAAAGAACGGCAGTTGATGAAGTAATTTCTGTATAATGTCTTTTTCAAGTTGTTAGGTTAGAGATTTTCGATTTTGCTCGAAGCATTTCTGAAAAGAAGGTGGCTCCTACCATTCCCAAAAAGATTGTGTTAACATTGCGTTTAGGATAAATTATGTTGTATGTGCTTGGGAGTGGTACTGGAAAGATGGTGTTTTGTTGTTTTTATATTCTGATGCCACCGTTGCCTTCGTGTGTGATTAAAGTCCTTGGTAGTTTCATTTGTCCGTTTACGGAAATGCTCTGTAATGATGATTCTGTCAGCAACTCAGATATAACTCTGATTACGTTTGCAGTAATCAGTAATGCGGTGTTGGTGAGGAACATTTATGATTGCATTTGAGTTGGAGACTAGTTTCTGGTACACGTTTAAACGGGGAGAATGACGTGTGTTTCACGTGTCTGTGAAGAGACCACTAAAGGCAGGCTTTGTGTGAGCAACATGGCTGTTTATTTCACCTGGGTGCAGGCGGGCTGAGTCAGAAAAAGGAGTCGGCAAAGGGTGGTGGGATTATCATTAGTTCTTATAGGTTTTGGGATAGGCGGTGGAGTTAAGAGCAATGTTTTGGGAGCAGGGGGCGGATCTCACAAAGTACATTCTCAAGGGCGGGGAGAATTACAAAGAACCTTCTTAAGGGTGGGGGAGATTATAAAGAACCTTCCTAAGGGTGGGGGAGATTACAAAGTATATTGATCAGTTAGGTTGGGGCAGAAATAAATCACAATGGTGGAATGTCATCAGTTAAGGCTATTTTTACTTTTTTTGTGGATCTTCAGTTGCTTCAGGCCATCTGGATGTATACGTGCAGGTCACTGGGGATATGATGGCTTAGCTTGGGCTCAGAGGCCTGACAGCGTGGACTTCTATAGTGCTATATTTGTACTACTGGGAGGGCAGGGGTAAAATGTACCAAAATTAGTAAATTGTGATTCCTCCCTCTACTTTTTTCACTTTTTTTTTTTTTTGCATTCTTCCAATAAATCTGGGCATGATATGGCTAATGCAGAGTGCCTGTGAATGAAGTTCAAACTGCAGAATATGGGACAACACAGTAATTGGATTTATCAGTGATTTCAGATTGGGTGATAATGATTCTTGAATTTTGGTCTTAAAACGAGGTCACGAGGGGACCTTTGTAATTACGAATTTTAAACAGCTCAGTGTGGGGTACAATTTAACTAGGAAAAACTTGCCTTTTATGTAG
Seq C2 exon
ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATGTGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013441:ENST00000321356:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.441
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF105774=UPF0560=PU(25.0=83.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development