GgaINT0017798 @ galGal3
Intron Retention
Gene
ENSGALG00000006057 | CLK4
Description
NA
Coordinates
chr13:14301854-14302714:+
Coord C1 exon
chr13:14301854-14301913
Coord A exon
chr13:14301914-14302556
Coord C2 exon
chr13:14302557-14302714
Length
643 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
GTTTTTGTTGTGTTTTTCAGGAG
3' ss Score
11.24
Exon sequences
Seq C1 exon
TTGTGCATGTACCTGTTTGAACACCGAATTCCTGCATATAACGTCCAGCAACGGAAGTTG
Seq A exon
GTGGGTTTTGTCTTTGGCAAGTCAGCTGTATTGTGGAGCACCTGCACTCGTGTGCTGGCAGAGTTCAAAACCTGTGGCTTGGCTCGTGGTACCTCAGTTAGGTTAATTTATCAACGTGAGCTGTGTGATTACTTAAAAAAAAAAGAAAAACAGCAGTGATTTGTATGCAGGTTTGTGGGATGTATTTGAGGCCAGCTGGACATACATGGCTTTCATGTAGCAACTTATGTACTGATGGTATGAAGAGCTAAATCTGCAGTTTGTCGGAATATTTGAAGGTTAAGGTCTCTCCAGGAGAAGTCTCTTTAAGGAAATGATTCTCTGTAGTCACTTGAGAGTTTATTTAAAACATGCTCTAATAACATGTTTGAAGCTATTAGGCAAAGATGAGTTGGCCCATTTAGCCTTGATTTGCGTTTCGTAACAGTGTTAGGATGGGAAAACTGTCTGCTCACCTAAATAATGTGAGGGAGAAGCTGAGGAAGAATTGAGGAAATGGTTTTCTAGCTGTGTCATTTGATCAAACTGCAGTAATGGACTCACAGCTACAAATATCAATGTAACACTTTTGTCTTCTGTGTGTTTTTGTTGTGTGTTGTTTGTTTGGTTTGTGTTTTTTGTTTGTTTTTGTTGTGTTTTTCAG
Seq C2 exon
GAGCAGATGCGTCACTCAAAACAAAGCCACTGCCCTGAGTGGGATGACAGGAGGAGCTGGGATCAGAGAAAGCACAGCAGCAGCCGGAAACGCAGGAAACGGTCCCACAGCAGTGGACAGGAAAGCAAGCACTATAAACCAAATCATGTTTCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057:ENSGALT00000009766:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.863
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCATGTACCTGTTTGAACAC
R:
CAGAAACATGATTTGGTTTATAGTGC
Band lengths:
214-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]