HsaINT0036457 @ hg19
Intron Retention
Gene
ENSG00000113240 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:13659]
Coordinates
chr5:178050257-178054054:-
Coord C1 exon
chr5:178053947-178054054
Coord A exon
chr5:178050418-178053946
Coord C2 exon
chr5:178050257-178050417
Length
3529 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTTTTCATTTCTATCAACAGATG
3' ss Score
11.14
Exon sequences
Seq C1 exon
GGCGACGGCGCTGCCGCCATTTTGTGGGGTGTTTGTCGCAGCGGCCGAGGAGGGAAGACGGCAGTTTGGCGACATTTCTCGGCCGAAGGGCCATTTGCTTTTGCGGAG
Seq A exon
GTAGGGTTGCAGATGGTGTGTGCTGGGACAGGCGGCTGTCGGTCTTTAGGTCTCCGAGCCAGGTGTCGGAGAAACGACCGCGTTAGGGGCCTGGGCTTCTGGAGCTGAGTTGGGAGTTCTGCGAGGCGCTGCTCGGCTGGTGCACGCCGGCAGCACCGAAAGTTGCTCGGGCGTCGCGGTTCTGCCGCTGACCCTTCTCTGAGGGCCCTGGCCGCTCGCGTCGCGGCTCCGGAGGCCGTGGGCTCGCGGTCCCCTGCTGCCTGGCGAGCGCGGCTGTTGGTTAACCCTGTCGGGACCTCTTCCAGCCGGCGGGCGCTAGGACCTGTCGGGAGACCCTTCGAGAGCCGTCTCTGGCATTCGTGTTGTCGGAGATCAAGTCTTCCCCTGGATTCCTGGCCTGGGCCGTTTGTAGCGTTTCGGGGGTTTTCCAGAGTCAAGCATTTGCCCCTGTCTTGAGTGCGCCAAAGGCACTGGCCGGGTGCCCAGGAGCCGGGAGGTGGGGACCGGGCGTCCGTGCAAATCCAGGTGGTTGAGGGCAGTAGCTGCTTGTGAGAGGTGGAAATTTGCGGAGGCTAGTCCTCTGTGCTATGCTGAACACAACATTGTTGCAGCGAACCTGCGTTTCTGGTGGTTTTGCATCTTATTATCCCTGGTTGCCTAAATAGTCCAGATAGGCTTATCCGATCCTTAGGAAACCGCCCCGCAAACTGAACTCGCCAGCCACTTTGTCTTGCCTCATAGCTGTCCTGTGCGATTGTGCTTTTTACACACCCCTACAGGCTTGTAACCCATTAAATGCAGTCCTCTTGGAGCCATCCAATCCTAAACTTATAACCTGTTTCGATGTTTTTAAGCCATGTACGTAGCGTAAAGTTGTCAAGAACTACAGGATCTTAAGGGCAGTGGCGATGGATCTACATATGAGATCCATTGTGTCATTATTTTTTGAAAGATACCTACTCTAGCATGTGGGATGCTTTATTAGAGGCAGTGTCATGATTCTAGATAGCTTTTCTTTTTTATGTATGCGAAGGAACCTTACCACGTAGAACGTGGGTCGGGTGATCTTTGTGCCTCCAGATAAAATATTTTTGAACATTGCAGGGTGAGTGGGGGAGGTCAGAGGCTGGGACTAACAGCTGAATTACATTTGAAGTAGTGAACTTGAGAAGAATTTTGGACTCTCACAACGGAGCTCGTTCTTATTTTAATGTTTGCATATTAACTGATAATTTGAGAGTTCTGTTTTGCTGGAGGTTAGCTGGTTGTAAGCAGACTTACAGTAGAAGAGGAAAAAACAAAACTGAAGAAGATACATAAGTCTTGAAAAAAACTTCATAGTAATGGAGGGTCATAATAATAACGCTCGGTCATCAGATGTGATTTTGCTTGCTATGATTTAAAAATGCTTAACCAAGCTGAGTTCCTGATGTGGTTAAAATACAACTTTGGTATTTGACGGAACGCTTCAGAAGAACTGCACTTGAAATACACATTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTGTCGCCCATACTGGTATGCAATGGCGTGATCATGGCTCACTGCAGCCTTGACTTCCTTGGGCTCCAGTGATTGTCCCAGTAGGTGGGACTACAGGCTCGAGTCACCATGTGCGGCTAATTTTTTGTATTTTTTGTAAAGGCAGGGTTTCGCCGTGTTGCCCAGGCCAGTCTCGAATTCCTGGGCTCAAGGGATGAGGCGCCACTGCGTCCAGCCATAAATTTTTCTTGATAGCTCTAATGAAGAAAGTTTGTGTTTTGGCCTTTTGCCTCAAGTAAATGTGTGCTGTTATTCATGTCACGTTCCCATATGGAAGTGACTCCATTTGTATCAAACCGGAATGCTCACTTCCATTGAGACGCTAACAAGAGTTTTAGAATTGCTGTTTGGCCTGATCAGTGCCTTCTCTTCCTCTGTAAAGTGAGCTGAGAGCCACCTTAGAAGGATGCTTGATGGGTATAGAATTAGAATCAGCAAGAGAGTGAATTAAAATATCTGACTATCTGGTGGCAATCAGACTCTGATGGCGTGACACATACTTTCTTGTGGAATACCTCCCAGAAGAATTGAAGCTGCCTCACTCCAAAACCTTTAATCCATTTAAAATCATTTAAATTTCTGCTTGCATTTGTTTGCTTATTAGTCATTTGGGCAAGCTGAATGAGGTTAACTGAGTGGGTTTTACTCCATTTTAGCTTTTTTCAGCTCCTTGCTGAATTGTGAAATTCTTCTCTTTTTACCATTTAAACTCACCCTGTTTAGGAGAATTTGGACCTGACTGTTAAAACTTAACTGTTTTGGAAAATAATTAAGATGGGGAGAGACAGATAGGGGTTATATTGTTTGAGCGCAGATGCTGAGCCTGGAAGGAACCCAGGTTATGCACTGGAGTTTGTAAATAAAGTCAGCTGTCACCGTTATCGTTTGCTTTCACTGTGACCATGCTTCAGTGTGCATCCTTGTAGGTTGAGTTCTTTTTCAGAGTTACTCCAGATTTACTACAAATAGATTTTAAGGTTAAGAATAACTGCTGGATAAGAAAATGAACTTGTTGGATAGAGAAAATGAGTTCATAAAATCACATAAACATTTAAAAAAATTTTTTTTGTAGAGACAGTTTCACTATGTGTAGCGCAGGCTGGTCTCAGACTCCTGGGCTTGGCCTCCCAAAATTCTGGGATTACAGGCATGAGCCACCGTACCCGGCCTAAAATCACCTTTTTATATCTCTTCAGTTTCTCTGTTGAATATTGTGTTCTATCCACACAGAACTAATATTCTCAAAGCTTAGAGTCATTCTGAGATTTAGAGAAAAGAACTATGGAGAATTTGAGAAAAAGAAGCTTCATCATTGAATAGCTCTTTACCATTAAAACAAAGTCACCTCCCATATTTAGTATCCCTAAGTGTTTTTGTCTTGCACTTCAGTTATTTGTATTACAGTACTTTGCCAAAGCTGCATGACACTGATATTATTTCTCCTTAAATCAGCTCACATTTTAATGTTAACATTTTTAAAAGAAAATATGTCAATAACTTAATTGGAAAATCACTAATAAGTAGAAAGTAACAAAATAAGATAAATAAAAACGTTACTAATTTTTAGCTAAATACTCTTGTCTGCTGGAAACACTAGGCCTGAACCTTTTTATTTGCCCCCCCCGGCTTTTTTTTAATTTTTAAAAAGGCAGTTAGCAAGTGTTAGTTGAAGACAAGCACCAAGCTGAGAATTTGTCCTGGCTGTAATCAGAATTCAAAAAAAAAAAATGTCTTAAGGTATCAGTATTACCCACAATTTAATACTAGATCTCTATGCCTCTTAGCAGTCATCTGACATACCAGTGCCTTGGGAAGCATTACCACCTAAAAAGATTTTGGAGCCTGTAAGACCCTGTGTGTTGGGTTTTGATAACTTAAATAATATTAATATATAATAATTTACCTATCACACATCTGTAACCTCCACAATTCCCTTTTCATTTCTATCAACAG
Seq C2 exon
ATGCGGCATTCCAAAAGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTATCGTGGAAGTCACAAGCGGAAGAGGAGATCTCATAGTAGCACACAAGAGAACAGGCATTGTAAACCACATCACCAGTTTAAAGAATCTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240-CLK4:NM_020666:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.459
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)