BtaINT0039406 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41119230-41122562:-
Coord C1 exon
chr7:41122497-41122562
Coord A exon
chr7:41119391-41122496
Coord C2 exon
chr7:41119230-41119390
Length
3106 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTTTTCATTTCCATTAACAGATG
3' ss Score
10.63
Exon sequences
Seq C1 exon
TACTGGAGAGAGAAGACGGCGGTTTGCCGACAATTCGCGGCCAAAGGGCCTTTTGTTTTTGCAGAG
Seq A exon
GTAAGGCTTCGGGCAGTGTGCTCTGGGCTGGGCGGCTTCCCGGTTTTGTAAGTCTCGAAGCCAGGTGTCGGAAAAACGACGGGATTCGGGGCCTCGGCGACCGGGGTGCGTTTGGGACACAGCTCTGCTTGTGACATTTAAAACCTAAAGTTGCCCAGGCGTCATAGTAGATGTAAAATCTTAGGGATAAAAGGCCTCGGCTCTGCCGCTAGGTTTTTTCAGAGCACCCAGGCCTCTCGCATCATGGCTTCTTAGGCCGTGCTTCGTCCCGCCGGTCAGAGTGAGTACCTGTCAGGAACCCTTCTAGAACCGCCTGGAGCAAGTATACTCCTAGGTCAAGCCTTCCCCTGGGTGCCTGGCCTCAGCTGTTGGTAGCGTTCGGGGATTTTCCGGGGTCAAATCTCTTGAGTGCGCCAAAGGCCCTGGCCAGGTGCCCCGGCGGATAGGCTGGGACTGTGGACTGGGCGTCCGAGGAACTGCAAGTCTGCGAGTCCAGGCGGTGGAATTTAGCTCGTGCTTATGAGATGTAAATAGGAGAGACTCAGCCATTGTGCAAACTGTTTTTAAAGTGGAGCGTGTCATTATTGCAGCAGATTTGCATTTCTGTTGCTTTTGAATCACATTGTCCTTGATTATTTAAGCAACCGTAGTATGCTTATCCTGTCCTTTGCAAACAGCAGTCCAAACTGACCGGGTCAATCTCCTGATCTCATTTTATAGCTATCTTTATATGCTTGTGTTCCATACATACACCTTCAGGCTTTTTGTTACCAGTTACGTCCCTCTTGGAGCCATCTAATCATAACTTTAACCTTTATAGATATTTTAAAGCCATATATATAGATGTAAATTTGTTGGGTAAAATAGAGTGTTAAAGGCAGTAGAGAATCAGGTTTCCAAGAGGGATATAAGCATATCTGATGTTTTTTGTATTTGGTGTTTTTATTGGAAGATGTCTAATGATTCTAACATGTAGAGTTTTTTATTAAGTAGAGGTAATGCAATAATTCTAGGGGGTGGGTTTTTGTTTTTGTTTTTTTGTTTTGTATGTGAAGGAACTTAATTTGTGTAACCTGGGTCTGGGATTCTTTTCTTGGCCTCCTGAGGAAATATTTCTGAAGAGTAGTGAAGGAGGGCTTCCTAACAGACGAATTAAAATGAAAGTAGTGAACTTGGCTAGAGAAAAAACTTTGGGTCTCCCAAGTCTCTTATTTTAATATTTTCACATTGATAACTGGTTATATAAGAATTATGTTTTGTTCACAGGTGAGCCAGTTATGACTGGCTGACAGTAGAAAGAAAAAAGCTGCAGCAGACATGTTTTGCAAAAACTATGTGTATTAGTCATAATAATAAGCATCAATCATCAGATGGGATTTTGCTTGGTATGATTTAAGAATGCTTAACTAAGCAGTTTGTTTTTTTTTTTTTTAACTAAGCAGTTTTAAAGTTCCTATGTGATTAAAATACAGTTGGGGTAATCAAAGGGTCAGAAGAATTCCACTAAAAATACAGTTCTTTTTATGGCTTTTCTGATGGTCTTTTTTGCTCCTTAATTTGTAGTGTGGTTTATTTCAGTTTCCCATATTCAGATGACCTATGAATATGTCATAGGTCAAATCCAAATGCTCACTTACCAATTTCCAGTGAGAACCCTCACTAGAGTTGTAGAGTTTGTTGGACTTAACCAGTGCCTTGTCTTCCTTTTTTTGTTGTTGTTTTTTTTTTTTTTTTGTCTTCCTTTTTTGAAGCAAGCTAAAAGAGAAGCTACATATCAGAAGTATGTGTGATGGGCATAGCGTTAGAATCAGCAAGAGAAGTGAGTTAAAAGATCTGAATATTAGTGGCTTCAGGCTCTGATGGCATTTTACCTATATTTTACCTATATTAGGAAATACCTCCCAGGATATGCCTCATTTCAAAATCTTTCTTAAACCATTTGAAATCATTTAAGTTGTGTTACTTGAATTCATTTGCTTGTTACTGAGTCATTTGGTCAAACTGAAGGAGGTTAACTAAGCTGGCTTTGCTCCAGTTTACCTTTTTCAGCTCCTTGCTGGGTTGTGAAACTCACGGCCTTCAACAGAGTTTGGACATCTGTTAAAAACAAATCTGCTTTGTGAAAGAGCTAAGATGTGGAGAGGCAGATAGGGATGACTTGTTAGAATACAGATCCTGAAAAACCTAATGAAGTTTGTAGGTTGCTGTCTGATTTCAGTGTGACCATATGCATCCTTACACATTCATTTTCTTAGTCACGCGAGATCTACAACAGATAGGTTTAATTTTAAGAAGGCTGTAGGATGATCTGAAAATAAACTTGTGGTTAGAAGAAATGAGTTCATAAAAATTTTTATTGCTCTTCAGGTTCTCGGTTGAATACTGTGTTCTATTCACACCCCGAGTTCTATTCAAAGCTGAGAGTCATTCTCAAGATTTAGAGAATAGAACTCTTGAGTGTTTGAGAAAAAGGATCTGCATTAGTGGCTCTTTACCTTTAAAACAAAATCATCTCCTGTATTAGTATCCCTAAGTATTTCTCTGACTTCAGTTATTTGTGTTACAATGTTTTGCCAAAGATGCATGATACTTGTTTTAAACTAGCTCACCTTTACAGTTAACATCAATAACCTACAGTTTGATAATAGCAATAATTTAAGAGGTTAGTAGCAATTTACCATAGGAAAAAGGTAAGAAAGCTTCCCAGATGTCTCAGTGGTAAAGCATCCGCCTGCCAAGATGGGAGACACAAGAGAAAAGACTCTAAGCCTGAATCCTGACTCTTTATTTTTAAAATAGCAGTTAGCGAATGTTAGTTGAAGACAAGCACCGAACTGAGAATTTATCCAGATGAATTGAAAAAGAAAGTATTAAGGTCTCACATTGTTATTTAGTACCAGGATCTGTGTGCCACTTAGAATCAATCATCTGACATACCAGTGGGGTAGTGCCCCCATGCCTTGGGAAACATTACCTACAAACATTTTAGAACCTCTGCGACCCCATGTCTTGGGTGTTTTTGTATTTAATCAATATTAATGTAAAGTACTGTATTTAGTAAACAAGCCATCTGATTCCACAACTCACTTTTCATTTCCATTAACAG
Seq C2 exon
ATGCGGCATTCCAAAAGAACTCACTGCCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCCCACAGCAGTACGCAAGAGAACAGATATTGTAAACCACATCACCAGTTTAAAGAATCTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414:ENSBTAT00000025863:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.407
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF081797=SspP=WD(100=51.9),PF050777=DUF678=PU(72.3=63.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]