RnoINT0037401 @ rn6
Intron Retention
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36715565-36720860:+
Coord C1 exon
chr10:36715565-36715593
Coord A exon
chr10:36715594-36720699
Coord C2 exon
chr10:36720700-36720860
Length
5106 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATTCCCTTCTCGTTAACAGATG
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTTGGAACATTTTCCTCTAACTAAGAAAA
Seq A exon
GTAAGTTGTCTTTGACTTTGTCAAATGAATGGAGGCAGTCAGTATGACAGTGAAACCATAAGCTCTCTGGAGCTAGCAAGGCTGACCTGTGAATGGTGTTTTCAGGAGTTAAGTCTGTAATTAGAGCAAGGAGCTGGTAATCACCTCAGGGTTGTCTAGATTACTAAGACTGTCTATAAAGAGATTGGCATAGAGTATTTCATTAATCTGGTAATGACAGCTCATATTTATGATCCCAGCTCTTTGGGAAGAAGATGAGAGGAGGACCAGAAGTTCAACCTTAGTGGGTTAGGCAGTATTTATAGTGTTGGATTCTCAGCAGGCTTTGTTTAGTTTTGATCTCATGTAGCCCAGACTAGCCTTGAACTTGCTATCTAGCCCAGAATGACCTAGAATTCCTGATCCTACTGTTTCTAAATCCTAAGTGTTGGGTTTACAGGCCTATACCACAAAAACCTAGTTCTCTGAAATTAAAAAAAAAAATAGAAAATTCATTATGTCTTCTGACCACAAATGTCCATTTGTTGAGTAACTGTAATAGAAAATGATGAGGCTGCCATGGTCGTAACTAGAATACTGTCAGAAGTCTTAGGACAAATTTTCCCATTCCTTCTGATGTGCTGACTGAGAAGGCGAGGAGAAAGAAAGAGAGGAAGGCAAGGAGAAAGGAGAAAGAGAAAGGGTAAGCACCCGCTACGCTTGTTTTTAGAGGCATATTCAAGTAAACGTCTCCAAATCCAGTTTAGAGCGGAAACGCCAGATGACAGACATAGCCTGGTCACTGAGCTGCCCTAGCAGGGAACATTCGCGGACTCTGAGCTCTGGTGGCTCTACCTGGAGCTGAGGTGCCGAGAAGATTGAGGGTTGACTGGCAGGCCGAGTGCGATGAGCGTCCCGCTTTAAGATGACGGGAAAAGGTCAGAGGTTGGCCCTACCCAGCGTGGCAACGCCCAGCAAAACTCTTCTTCAAGAGCCCGACACGTGCCGTAGATTTAAGGCGATCTTCCAGGTTCACCCAAGAACAGAAAGAACCTCGACTTGACAGGCTGACAGAACTCGTCCTACAGGCGCCTTGGCGCTGCGCAGCCGCAGTATGAATGATAAAGCCCCCCGCCCCTGACGTCACAGACCCCCGCCCCCTTGCAAGGTCTGTGGGCGGGCACGGGGCTCCGTGACGCATGCGCGCTTGCTCGGCGTAGGTGGCGCTGGATCCACCTGAGGAGGTTGTAGGGTGACGGCGCGGACGCCATTTTGTCGGTGTTTGTCGCAGCGGCTGGAGAGAAACGACGGCGGTTTGGCGACATTTCTCGGCCAAAAGGCCTTTTGCTTTTGCGGAGGTGAGGTGGGCAGTGTCGCTCAGCTAGGTGTCTGAGGAAAGAGTGGGCTTTGGGCGTCAGCACCCGAGGGTGCGTCCGCGGGGCTGGCGGGGTGCCTCTCAGCCGGCGGCGACAACACCCGAGCTGCTGCGGTTTCGCCTCTCTAGTCAAGGCCCGCAGGCCCCGGGTTCGCCCGACGGTGCTGTCCGGCAGCTCGGGCCTCACTCACCTCTTGCCACGGCTTCGCCGGCCATCGCAGGAACCAGCAGGGAGACCCCTTGGCGGGACGCATCCCCGACGCTAGTGTGGTCCGGAGTTGAGTCACCCAGACCCCTCCTCACCTTTCTCGGCTGCCTCGGCCGTTTGCATAACTGGAGGCTTTTCCAGAGTCCGATATTCGCCCTGTGTTTCAGCTCTAAGGGCCCTGGCCAGCTGCCCGGGGGAGGTAGGGCAGGCACTGCAGCGATCCAAGTGGTTGGAGTTCACCTCCAGCTTCGAGGAACACACTTGGGAAGGAAGGTTCGTCCTTCGTGCCAGGCGGTCACCCCCACACCCCTAAACCTCCAGACCTCGGTCGCCCTGATTGCCCTGGAACTATGTAGACCAGGCTGGACTCGAACTCCAGAGCTTCTCCTGCCTCTGCCTCCCGAGTGATGGGATTAGAGAGCGAACATTGCATATACATTGTGACAGTCCCCAAAACCCTGGACAGGTAGTCATCTGGTCTAATATTAAAGCTGCAGATATTTGGCCTAACTTTGAAAACTCACCCAAGGGCCTCTTGTACTCCACTTAAATGGGAGACCGAAATTTCTAAAGCGTGGTGGAGAATCATATTTCTAATATGAACATACTTACGGGTTCCGTTGTATCTTTTATTGAAAAAAATACCGAGGGGTGTAACATTTTTTTAAGTATTAGAGATAGTGTAATATTTCGAGGTGGTTTTTCTTTCCTGTGTATGTGAAGGAACTTTAATCTCATGAGCTCAGAAATCTTTTACTTTGCCTCCTAAGTAAATATTTCTTAGTTGGTTTTTTGAAGCAAGGTCTCCCTGTGAAGACCAGGTTGTCCTTGAACTTGATCAGGGCTCCACCTGCCTTTGCCTCCAGGGTGGTGTGTGCCACCACCACACCTGTCTAAGAAAATTATTTCCGAACTTTGCTAGAGATAGAGTAGGGGTGGGACATGTTCATCAGGGCCTGTTGGGACTGGGACCCACTGATAGACTGCTAGGTGGCTTTGCATGTTAGTAACTTGATAAGTTGAGAATTGTCTTGTGAGAGGTAAACTGGCTGTGGCAGTGTGGAGGGGGAGGGAGAACTTGAAGCAAGCACCCAAGTCTTGCGAAACCCTAATGGCCAGTCATAATGATGAGTCATCAGAAGCTGTAAGTTTGACTGCTGTTTTTTAAGAGTGCTTAGCCTGTAGCCCGGTAGCTTGAGATTCAGAATTCAGTTCCCAAAGAAACAGAGGAAAAAAGCTTTAATCAAACCAAAAACCTTAAATACAGTTTTGATAATAAAAGGAATGTGTCCACAGTATTCCAGTAAAAATGGGAAGATGAGTTTTTCTGAAAGCGTGAGTTTTGGCTTTTGTCTCAAGTTTGCAGTGTTGTCTATTTTACTTTGCCATATTAAAATACTATATCAAAAGCAATGCTTGGCTTTTACCACGATACCTAACACGAATTTAGGATTTTTTTTTGGTATGTGGCTTAATTCATGCTTTCTCATTTTTAACTGAGCTAAAAGAGAAGCCACATTATCAGAAAGATGCTTGGCAGGCGAGAATTAGAAGAAAATATAGCTTACTGAATGTTTGGGCAGGACTGTATAGGTCAGTGGTAGAGTTTTGCCTAGCATTAGGAGCCTCCTCTCCCCATTACATCCTCAGTAATCAGGAAATAATAGTGATAGTATCACACCCTGATGTTGTGACGCACACACACCCTTTCTGAGGAGCGCTTTGGAGAACTGAAACTGCCTATCTTTGCAAGTCTGGAGTTTAATAGATTTGTTAGCTTATATTTCAGTCATTTAGGCAAGCTGAAGGCGGTCAACTAAATTGGTTTTGTTCCATTTGGGTCTTATTCAGCTTCTTTGGGTTCTTCTCCTCTGCTCCCACCCCTGAAAACCATTAAAATCTGCTTAGCAGAGTTCAAAATTAAAGATTTAACTATGGAACTTAAAAGACTGCTCTTTTAAAGGACTTTTAGACTTTAGGGAATCATGTGCCCTCTTGTGGCGTCCATGGGCAACTGCACTCATGTGTTGCTCTTCCCCAGTCTACCCCATCCTCATTAAAAATAAAATTAATCTTTTAAAAATCGATTTAAGGGAGCAGAGTAGTTAAGTGGGTAACAGTGCCCACCTTTAATCTCTGAGACCCACATAATGAAAGGAGAGAATTAACCCTGGCTTGCAACAGTCCTATACATTTAAAAGGATAGAAGTTAGTTAGATCCTGAGCCTGGGGGAAATCCATAGGAGGCTGTAGATGAAGTCTGGGAACTGTTACCATTACCTGATGTCACTGGTCATGTCTCAGTTTAAGGATCAAACTAATTCTGGCATTTAGAGAAAGGAACTCTGTTACAGAGTCTAAGGAAAAAGAAATCTCATTAATGAAAAGCTTTTTACCTTTAAACCAATTACTTGCTTGCTTCTCTCAATTATTTGTATTAAACTTTGCCAGGCTATAGGAAGTTTGTGATACTATTGGAATAGACTTTCGTTAACTACAGTTGTAGGTGTTATTCTTAAATATTCAGATCTAGCTGAAAGGTAGTGGTTTACACCTTTGATTCCATCACTCTAGAGGCAGATGGATCTCAGAGAGTTTGAAGCGTAGTTCACAGAGCTAGTGCCAGACCTATACCAAGAAACTTCCTGTCTTAAAGGGAAAAAAAAATGTGCACATTCATTTCAGTCTTGGTTTTTAAAATCCAATTTGAGAGACTGGGAATGTAGCTTAGTTGGTGGAATTATTAACATAAGTGACCTAATTTTAAAAATCAGCATAAGCAGAAGGAATACAAAAAATTGTGTTGGGAGTGCACGTGTACATTTTGTTGAGTATGTGGTCCAGAGGTCAACATAGGGTATCTCCAGAGGTCTCCACATTTTTTAGGCAAGGACTTTCGTTGAGCCCAGAACTTGCCAACTGAGCTAGACTGGGCTAGCCAGTGAATTTCAGGGATCCATATGCCCCCATCTGAAGTTACAGGTCTGTTTTGTGGTGCCTGGCTACTTATGTGGATGTGAGTGATCCGAACCCAGGTCCTCATACTTGCATAGCAAGCACATTACTGAGTAATCTTTCTAGCCCTTGAGCAATTTTAATTGGCCCTTTAAAAAAAGTTTAAAGACTAGCCAGGTGCATTAAGAAATGCCTTTAGTACCAACACTTGGGTAGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGAACTCAGAACTTGTCTACAGTTAGTTCTAAAACAGCCAGGGATATCTGAGAAACCCTGTCTCAAAAGACAAACAGAAACTTAAAGTTAATGAGTGTTTCTGAAGGCAAGCACTAAGTAGTGAAAGAAACCGTATTAAAGGTTCCATGCTGTCTGTCGTTTAGTACTAGGGTCAGTTCCATTCAGCAGTCATCTCACATAGGAGTGGTATTGTGTTCTAAGCTTTGGGAAATTTATCTAAGAGCCTATGTGACCCTCTGTACGAAGTATTCATATTTAAGCAATGGTAATGTACAACCATCTTTAGCTTCCCACTCACTCTCATTCCCTTCTCGTTAACAG
Seq C2 exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCTCATAGCAGTACGCAGGAGAATAGGCATTGTAAACCACATCATCAGTTTAAAGACACTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714:ENSRNOT00000005048:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]