RnoEX0021846 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36715565-36720860:+
Coord C1 exon
chr10:36715565-36715593
Coord A exon
chr10:36716335-36716930
Coord C2 exon
chr10:36720700-36720860
Length
596 bp
Sequences
Splice sites
3' ss Seq
GTAAACGTCTCCAAATCCAGTTT
3' ss Score
3.52
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTTGGAACATTTTCCTCTAACTAAGAAAA
Seq A exon
TTTAGAGCGGAAACGCCAGATGACAGACATAGCCTGGTCACTGAGCTGCCCTAGCAGGGAACATTCGCGGACTCTGAGCTCTGGTGGCTCTACCTGGAGCTGAGGTGCCGAGAAGATTGAGGGTTGACTGGCAGGCCGAGTGCGATGAGCGTCCCGCTTTAAGATGACGGGAAAAGGTCAGAGGTTGGCCCTACCCAGCGTGGCAACGCCCAGCAAAACTCTTCTTCAAGAGCCCGACACGTGCCGTAGATTTAAGGCGATCTTCCAGGTTCACCCAAGAACAGAAAGAACCTCGACTTGACAGGCTGACAGAACTCGTCCTACAGGCGCCTTGGCGCTGCGCAGCCGCAGTATGAATGATAAAGCCCCCCGCCCCTGACGTCACAGACCCCCGCCCCCTTGCAAGGTCTGTGGGCGGGCACGGGGCTCCGTGACGCATGCGCGCTTGCTCGGCGTAGGTGGCGCTGGATCCACCTGAGGAGGTTGTAGGGTGACGGCGCGGACGCCATTTTGTCGGTGTTTGTCGCAGCGGCTGGAGAGAAACGACGGCGGTTTGGCGACATTTCTCGGCCAAAAGGCCTTTTGCTTTTGCGGAG
Seq C2 exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCTCATAGCAGTACGCAGGAGAATAGGCATTGTAAACCACATCATCAGTTTAAAGACACTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]