RnoALTD0016158-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022555 | LOC497899
Description
similar to hypothetical protein 4930503F14 [Source:RGD Symbol;Acc:1561674]
Coordinates
chr10:36711479-36717351:-
Coord C1 exon
chr10:36717251-36717351
Coord A exon
chr10:36717139-36717250
Coord C2 exon
chr10:36711479-36711602
Length
112 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTTGTTTTTTCTCCACAGAAT
3' ss Score
12.57
Exon sequences
Seq C1 exon
CCCCGGGCAGCTGGCCAGGGCCCTTAGAGCTGAAACACAGGGCGAATATCGGACTCTGGAAAAGCCTCCAGTTATGCAAACGGCCGAGGCAGCCGAGAAAG
Seq A exon
GTGAGGAGGGGTCTGGGTGACTCAACTCCGGACCACACTAGCGTCGGGGATGCGTCCCGCCAAGGGGTCTCCCTGCTGGTTCCTGCGATGGCCGGCGAAGCCGTGGCAAGAG
Seq C2 exon
AATTACATGATATGAGTGCCTGACTCCTGGGTATAACCCCAGCAACTGGGAGATCAAGACAGGAAGGGCAGAAGTTGATGGTCATCTCTGTCTACAGAGTGGGTTACAGGATAGCCTGGGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022555-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCCCTTAGAGCTGAAACA
R:
AGGCTATCCTGTAACCCACTCT
Band lengths:
202-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]