HsaINT0041098 @ hg38
Intron Retention
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123768467-123769574:-
Coord C1 exon
chr10:123769457-123769574
Coord A exon
chr10:123768723-123769456
Coord C2 exon
chr10:123768467-123768722
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTCTCTGTCTTTGAGTAAAGGTG
3' ss Score
2.33
Exon sequences
Seq C1 exon
GGTCTCATTCCGTCTCCCAGGCTGGAGTACAGTGGCACAGTCTTGGCTCATTACAACCTCCACCTTTTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGAAGCTGGGATTACAG
Seq A exon
GTGTGCATCACCATGCCCAGCTAATTTTTTTTATTTTTGATTTTTGTAGAGTTAGGGTTTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGCACTGGTGCCATCTCCCAAAGTGCTGGCATTATAGGTGTGAACCGCTGCGCCCGGCCGGCCCCTCCTCTTAATACTCACATTTGATCTTAAGTTCCAGGATATGAATTTTGGGGGGACACATACATTAAACCATAGCACCCTGAGATTTTAAAAGCTGAGCTTTGAAAGAGAAAATACCTAAAGAAAGCCCACTTTACACTGTGTCACTGCTGATTTGCCCTGATGGACTATTCTCTGCTTATATTCATTTGTCTTTGTTAAACTTAATAGGAAGTTATTTTAAGAAAAATAATTGCCTCCCAAAAGAGAGGCACTGATTGCTACGGCTTGTGCTCAACTTGTGAATGTTAAGCCCTCAGCACTATGTTATTTGATCTGTTCTTGGTACGTAAAAATGGACATTATTCCCCTGTGACAGGTGTCATGTCAGATTTTTCTACACATTTTCTTACATACCTGACTGTCTGGGAATAAGACAGTTGTCCTGATGTCATTTTAGAGGTTTGTTTGAAAGAACAAATAGGTCTAAAACGGTAAGCTTATATTATTCAAGACTTTCCCCCCAACACAATGTGACAAGCACCGTTTGGCCCTAAGTGTTTCAACGTGAACCTGTGCTTCTCTCTGTCTTTGAGTAAAG
Seq C2 exon
GTGAGCCCGAGTTCCACTACATCGCGGGGGCCCACGGCAATGAGGTGCTGGGCCGGGAGCTGCTGCTGCTGCTGGTGCAGTTCGTGTGTCAGGAGTACTTGGCCCGGAATGCGCGCATCGTCCACCTGGTGGAGGAGACGCGGATTCACGTCCTCCCCTCCCTCAACCCCGATGGCTACGAGAAGGCCTACGAAGGGGTAATGGCCCTGGCCCATCTCACCCAATAGGACATGGGCAGCGAGGCCCCAGCTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898:ENST00000368854:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.0=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCATTCCGTCTCCCAGG
R:
TGCCCATGTCCTATTGGGTGA
Band lengths:
355-1089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development