HsaINT0041265 @ hg19
Intron Retention
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65592691-65595829:+
Coord C1 exon
chr7:65592691-65592727
Coord A exon
chr7:65592728-65595730
Coord C2 exon
chr7:65595731-65595829
Length
3003 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TTTTTTGTATCTCCTCCTAGGTA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq A exon
GTAAATTGGATTGTTACATTTTCCTCTCTGATAGTTTGCCCTTCGCTCCTGAGATTGTTAAATTGATTTTGGTTAGAAATGACTGAATTCAGGCTGGGTGCAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTGGATCACTTGAGGTCAGGAGTTCAAAACTAGCCTGGCCAACATGGTGAAACCCAGTCTCTACTAAAAAATACAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAGTCCCAGCTACTTCGGATCCCAGCTGAGGCAGGAGGGTCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAACTAAGATGTGCCACTGCACTCCAGCCTGGGCAATAGACCAAGGCTCTGTCTCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAAAGAAATGACTGAATTTATTTGGATTTTCCACTTTAAAATAAGACATGGCAACATCTGGTGGACCTTGGAATAGTGTAAGCTTGACACGTTATACATAGTACTTCAGGAAAGCTGGGAAGACTCTATTTTAGAGGGGGCAACCTTCTCTAAATCTCAACGATTCCAAATCATCATTTGGGATGTAGTCATAGGATAGAAGCATCTATTTTAAGGCTGTTTCTGTCTGCAGAATTTCCCATTAAAATTTTTATGATTTTTCCTAATTATCACCTTTGATATATTTATATATTTATAATGCTTTTATACATTGCAAATAGTCTTATGGGTATTAACATCCTTATTTTGAAAGTGAGTTTAAGCCGAGCACAGTGGCTCATGCCCATAATCCCAGCACTTTGGAAGGCCAAGGCCAGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATCCCTACTTAAAAAATAAAAAAAGAGAGTGAGTTTAGTTGACTCACCTTTCTGAATAGTAGAAATTAAGAAATGTAGAATTTTTTGGGCTTAGGGTGGGATTGCTGGAGAAAGGAAAAGAAGGAAAAAGGTTGGTAAGAGAGGAGATATTCCAGCATTTTTGCCTCCTATTTGGCACTAGCAAAACCATCTGATAGGCTCACTCCAGGTGTAGAAAGAACCATTTATACCTTGACTGTGAATTTTCCATGTGCTAGAGTCTAAACTCAGAAAGACTCAGGAGGTCTAGAAGGTAGTAGGTTAAGTGCAGTGTCTCACGCCTGTAATCTCAGCACTTGGGAAGGCCAAGGAGAGAAGATTGCTTGAGGCTATGAGTTAGAGCTCAGCCTGGGAAACCTAGCAAGACCCCCAGCTCTTAAAAAAATAAATTAGCGGCCGGGCGCGGTGTCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGAACATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCAAGGTGGCGGGCGCCTGTAATCCCAGCTGCTCGGGAGGCTCAGGCAGGAGAATGGCGTGAACCCGGGGGGTGGAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAATAAATTAGCTGGACATGGTAGCAAACACCTACTATGGTCCTAGCTACTTGGAAGGCAGAGGGGAGGTTCGCTTGAGCCCAGGAGTTTGAGGTTACAGTGATGACCACTGTACTCCAGTCTGGGAGACAGCTTTTGAGACCGTGTCCCCAAAAAAAAGCTCCCAGAGTGTAAGACAGCAAAAAGAAAGAAAGAAACCTACCCCCTTGTGGTGCTCCCCTCCCCCGCCCCACAAAAAAGAAGGTAGTAGAATAAACAGAGTTGGCCATATTCTTTCCTCTCTAAAGGCTCAGTCTTAAGTGGTTGCAGCTTAGAACAGGAAGGAAATGGTTGAATGGTTTTTGGCCAAGCCTTTGGCTTTTAGGAGCCTCCTTGTCCAGTTTGGACTTTGCTAGGTGTTTGGGTGTTTTATCCATTGGGGAAACATTGCATTCATTGATCTCATGCCACTATTTCTGAAAGGACCAGCAGATGAGAGGGGTCGTATTGTATCTGGTGATGGTGTGTGAGCCTGCATTTTCTTCACTTCTGTGGTAGAATCTCTAAAACAGGAATGAGACTAAGATTCCCCCCTGCCCCCAGCACTAATACATGTATGTTTTATCCTTGTGGGAAAGTTTGCTTCTAAAGATCCATAGCATTTTTTCCTTTCTTTTTTGGGGGGTAAACTCTGTCTTATCACTTGCCTCAAAATTTTTCTTTTCCAGAAAGAAATTATTATATTAGATTTTTATACTAGAGAAGCAGGATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCACCATCCAGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCGCCACCATGTCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGAACCGCCCACCTCACCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCATCATGCCTGGACCCAGAATTCTTTTTTAACAAAATATTTGCTTTAAGAAAATCTGCTTTCAAATAGTATATTTTTGAGATCAGATTAGTGATGTACATATTGATAGGAAATATTTGAAATATTTTAAGTAAATTAATGAATTTGAATTATTTGGCTTATATAAAAGAACATTTTTTAAAAATGTAATATGCCTCTGGGACTCATATTTGCTCAAATCCAAGAGTTGGAAGCTGGGTGATGGGCGGGTGAAAGGAAGTACTATACTTTCCTGTTTATCCTTCAAAACCACTGACCTTGGATAGATATATTTCTCAAATTTATTCATAAACGTCTTTTTTGTATCTCCTCCTAG
Seq C2 exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258-CRCP:NM_014478:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)