BtaINT0043731 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037489 | CRCP
Description
Bos taurus CGRP receptor component (CRCP), mRNA. [Source:RefSeq mRNA;Acc:NM_001077870]
Coordinates
chr25:28271655-28275632:+
Coord C1 exon
chr25:28271655-28271691
Coord A exon
chr25:28271692-28275533
Coord C2 exon
chr25:28275534-28275632
Length
3842 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TTTTGTATATCTCTTCCTAGGTG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GAAGGATGCCAATGCTGCACTGCTCAGTAACTATGAG
Seq A exon
GTAAATTGCTTTGCACTGTTGTGTTTTCCTCTCTGATTGTTTGCCCTCTGCTTCTGAAGGCTGCTGAATTAGTTTTGGTTAGAAATGACTGAATTCATTTGGATTTCCCATTTAAAATAAGAGAGATGGCACCATCTGGTGGACTTTGGAATGCTCTTAGCTTGGTAAATCACACACAGTAATTCAGGAAAGCTGAGAAGGCTCTAGCTCATGTAGGCAACCATCTCCAAATGCTAGAGATTTTAGATCTTCATTTGGGATGCCTTCATAGGATGGAAGTATCTATTTTGGAACTGTTTCTGTTTGTAAAAATTTTCTATTAAAAAATGTGTGCCTTTTCCAAATTAACACTCTTTAGCTGTAAAATGCTTTTGTAAGTTATTATTTTGATCCTCATAATGGTCTCATAGGTATTAACACCTTCATTTTGGAAGTGAGAGTTTAGTTGACTCACCAGACTGAAGCAACTTAGCAGCAGCAACAGATTTGGAATTTGGGGGCTTGAGGGTTGGGTTGCTGGGGAAAGAAAGGAAGGAAGGAAAAAGGTTGGTGAGAGCGGAGATAGACCATTATTTCTGCTTACTTTCTATTATACCTGGGTGTTGTTTGGTAATAGCAAAACCATCTGATAGGTTAATTCTGGGTATAGCAAGAACAATTCATATATTCGTCAATTTTTCTTAGGTCAGGGTCTAAACTCAGGAAGACTTAGAGGAGATTTAAGTCTTCATTGTGTGATATATGTAGAAGGTAGTAGAATTAACACAGTGGGCCGTATTCTTTCCTTCCTAAAGGTTCATCTTAAATGGGTTCTAGTCATAACAGGAAGGAGATGGTCAAGCCATTGGCTTTTAGAAATCTCCTTGTCTGTTAGGCCTCTGGACAAGGTGTTTAGCGTTTTATCCATTTGTGAATGTTGCATTAATGGGGTCTCAAGCCACTATATCTGAAAGGACCGACAGGCAGGGGACGGTTGCATTGTATCTAGTCGTTACTATGTCGTGATACTGTGCTTCTCACAATTTTCTGGTATAATCTCCAAAATAGGAGAGAGATTTCCTCCTGACCCTTCTTAGCACTAATAGACATGTTTCTTCCTTGTGGGAAAAGTTTACTTCTAAAGTTCTATAGCATTTCTGTCCCTCCTCCCCCCTTTTTTTGGTAAACCACTTTTATCACTTGCCTCATAATTTTTCTTTTCCAGAAATAAAATAGATTTTCATATTGGAGAAGAAGCAACATCTTTTTTTTTTTTTTAATTTGTTGTCGGAAAAATTTTTTTAATTCAGGTATAATCAAATATGTTATATTAGTTTCAGGCGTATGACATAATGATTTGATATTTGTGTATACTGCAAGATGATTTCCACAATAAGTAATTAATTAACATCATAGTCACATAATTTTTTTTTTCTTGTGATGAGAACTTTTTAAGATTTACTGTCTTAGCAACTTTCAGATATGCAGTACAGTATTAACTAGAGTTGCCATGCTGTACGTTATATCCCCATGGTTTTCTTTTATAATTGGAAGTTTGTGACATCTGAACACTTTCATCCGTTCTGTCACCCTCCCTGCTGTCTCTCGCATGCATCTATTCTTTATGTCTGTGAGCTTGGATTTTGGTTTTGTGTTGTTTTTAAGATTCCACATGTAAGTAAGATCATAGAGTATTTATCTTTCTCTGCTTTATTTTACTGAGCATAATGCCCTCAAATTCCATTCATGTTGCAGTTGGCAAGATTCCATTTTTTATGACTGAATAATATTCCTCTGTGTGCATGTATGTGTGTATATGTGTGTGTATAAATATATATATATGTATATATATATACATACACATGTGCACACACACGCATATGCCACATTTTCTTTATCCATTCATCTGTAAATGGGCACTTTAGGTTATTTCCTTACCTTGGGTATTATAAATAATGCTTCATATATCCTTTCAAATTAGTGTTTTTGTTTTCTTTGGATAATTATCCAGAAGTGGAATTACTGACTCATACGGTAGTTCTGTTTTTAATTGTTTGATAATCCTTCCCTGTTTTCCGTAGCGGATGCACCAGTTAACATTCCCAGCCATCGTATGCAATGGCTTCCTTTTCTTTATATCCTCACCAGTACTTATTTCTTGACTTTTTGATAATAGCCGTTGTAACAGGTGTGAGGTGATAATCTCATTGTGGTTTTGATTTGCATTTCCCTCATGATTAGTGATGTTGAACATCTTTTTGTGGACCTGTTGGCCATCTGTATGTATTCTTTGAGAAAATGCCCATTTTAAAATTGGATTATTTGGTTTTTTGCTTTTGAGTTGTAGGAATTTACATATTTTGGATATTAACCCCTTATCAGCTAATAATTTGCAGACATTTCCTCCCGTTCAGTAGGCTGCACTCTGTTGATGATCTCCTCTGCTGCGCAGCAGCTTTTTAGTTTGATGTCGTCCCACTCGTTGATTGTTGCCTTTGTTGCCTTAGCTTTTGGTGTTGAATCCGAAAATTCATTGCCAAGACCAGTGTCAAGGCGCTTGCTGCCTGTGTTTTCTTCTGGGAGTTTTATGGTTTCAGATCTTCCATCAAGTCTTTAATCCATTTTGAGTTAATTTTTGTGTATGGTTTATGTAGTGATCTAGTTCCATTCTTTTCCATATGGCTGTCCAGTTTTCCCAACACCGTTTATTGAGACTATCCTTTCCCCATTGTATATTCTTGGCTCTTTTTTCATCAGTTGTTAGCTGTGTATGTGTGGGTTTATATCTGGACTCTATTCTGTCCCATTAATCTCTGCATCTCTTTTAGGCCAGTACTGTGCTGTTTTGATTACTATAGCTTTGTAATATAGTTTGAAATTGGGGAGTGTGATGCCTGTAGCTTTGTTGTTCTTTTTCAAGATGGCTCTATTCTGGGTCTTTAGTGGTCCATACAAATTTTAGGGTTGTTCTTTTTCTGTGAAATGTGCAATTGGAATTTTGATAGGAATTATACTGAATCTGGTTTGCTTTGGGTAGTACAAACACTTTAACAATATTCTTCCAATCCACGAGCATTTATTTGTGTCTTGACTTTTTCTTTTATCAGTGTCTTATAGGTTCCACTGGACAGGTCTTTTGCCTCATTGGTTAAATTTTTTCCAAGGTGTTTTGTCTTTTTTGTTACAATTATAATGATTGGAATTTTTTTTTTTTTTTTAATTAGTGTATAGAAACACAGCAGATTTCTGTATGTTGGCCTTGTATCTTGCAACTTTACTGAGTTCATTTCTTAGTTCTAACAGTTTTTTGGTGGAGTCTTTAGGAGTTTCTGTAAATAATACCATGTAATGTGCAAATAGTGACAGTTTTAATTTTTCTTTACATCCCTTTGGATGCCTTTTATTTCTTATCTTGACTGATTGCCCTGTCTAGGTCTTCCAGTACTAAGTTGAATAAAAGAGGCAAGAGTGGGCATCCTTGTCTTATTCCTGATCTTAAGAGGAGAAGCTTTTTGCTTTGCACTGTTGTGTGCAGTGTTGGCTCTGGGCTTATCATGTATGGCCTTTACTGTGTTGAGGTATGTTTGCACTATACCCACTTTGTTTAGAGTTTTATGGTTTATATTGATAGGAAACACTTGAAATAGCTTATGTAAACAAATGAATTTATACTGTTTGACTTAGATAAAATAACATCTTTAAAAAGTCAAATGCTTTTTGGATTCATTTGCTCTAATGCAAGAGTTTGGAGGAGGGTTTATGAGAAGAAAGAGATGTTCTATTTATCCTTCAAGATCATTGACCTTGGAATAGATACATTTCTCAAACTTATCTATGAAAATTTTTTGTATATCTCTTCCTAG
Seq C2 exon
GTGTTCCAGTTACTAACTGACTTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGTTCTGGGCAACAGAACTTGAATACTATCACATATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037489:ENSBTAT00000053944:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(4.3=38.5)
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]